SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma08g40480): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma08g40480): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma08g40480

Feature Type:gene_model
Chromosome:Gm08
Start:40214285
stop:40215645
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g40480
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03610AT Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:915650-918326 FORWARD LENGTH=359 SoyBaseE_val: 5.00E-13ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0016788GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds SoyBaseN/AISS
UniRef100_G7I351UniRef Annotation by Michelle Graham. Most informative UniRef hit: GDSL esterase/lipase n=1 Tax=Medicago truncatula RepID=G7I351_MEDTR SoyBaseE_val: 2.00E-24ISS
UniRef100_I1KXM7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXM7_SOYBN SoyBaseE_val: 4.00E-131ISS

Expression Patterns of Glyma08g40480
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g40480 not represented in the dataset
Glyma08g40480 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g40480 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma08g40480
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g40480
>Glyma08g40480.1   sequence type=CDS   gene model=Glyma08g40480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTACCAACCTCATATTTGAAAATTAAATCCCCCACACCTTATATATTTAGAAATTCCTCGGAACTACAATATGGTATGAACTTTGCTCACGGAGGGACTGGTATTTTCAACACTTTGGTTGATGGACCAAACATGACTTCTATACTAAAGCTGACCTTGAAAGCTCAAGTTGCTCTAGTGAATGCTGCGGGTAATGACTATGCTACATTTCTACTACGAAAACTTGGGAGCATACAAATTGATCAATACGACGATGATTATCCAAAATTATTTTTAAACTTGTTTTATCGACGATGGTTTTCACCAAAATTGTCATCGTATCAAATACGGTTTTGGTACAACCCTGGTTGTCCGAGCATCATTAAAATTTTTATTTATAGTAGTTTTTTTTTTTCCTTTTGTACAATGACGGCAATGAGGATTGAAGCTAGATATCCTCATGCATCTATCAAACCTCCCACCACTAGCAAACGGTTTGAGGTGGAAGATATGGTGAAAAGTGTTTTTCTTTATATCAATATTCAATATTACCACTATCCCTAA
Predicted protein sequences of Glyma08g40480
>Glyma08g40480.1   sequence type=predicted peptide   gene model=Glyma08g40480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPTSYLKIKSPTPYIFRNSSELQYGMNFAHGGTGIFNTLVDGPNMTSILKLTLKAQVALVNAAGNDYATFLLRKLGSIQIDQYDDDYPKLFLNLFYRRWFSPKLSSYQIRFWYNPGCPSIIKIFIYSSFFFSFCTMTAMRIEARYPHASIKPPTTSKRFEVEDMVKSVFLYINIQYYHYP*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo