Glyma08g40460 - SoyBase

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Report for Sequence Feature Glyma08g40460

Feature Type:	gene_model
Chromosome:	Gm08
Start:	40204226
stop:	40205705
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g40460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G70000	AT	Annotation by Michelle Graham. TAIR10: myb-like transcription factor family protein \| chr1:26363674-26364635 REVERSE LENGTH=261	SoyBase	E_val: 4.00E-57	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR25040	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR25040:SF29	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_Q0PJB3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB149 n=1 Tax=Glycine max RepID=Q0PJB3_SOYBN	SoyBase	E_val: 1.00E-148	ISS
UniRef100_Q0PJB3	UniRef	Annotation by Michelle Graham. Best UniRef hit: MYB transcription factor MYB149 n=1 Tax=Glycine max RepID=Q0PJB3_SOYBN	SoyBase	E_val: 1.00E-148	ISS

Expression Patterns of Glyma08g40460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g40460 not represented in the dataset	Glyma08g40460 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g40460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g293300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g40460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g40460

Limit To All Plant Sequences

>Glyma08g40460.1   sequence type=CDS   gene model=Glyma08g40460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTTCCGCAGAGAAGGACGGGATCATGCTCTTCGGCGTGCGCCTCTCCGTCGTGGATAACCACCCCACCTCCTTCAGAAAGAGCGCTAGCATGACCAACCTTTCTCAGTACGAGTCTCCACCACCGCACGATCCCAACGCAGGGTATGCCTCAGACGACGTCGTTCACCCCTCCCGTCACACCCGCGAACGCAAGCGAGGGGTTCCGTGGACGGAGGAAGAGCACAGGTTGTTCCTGCTGGGATTACAGAACATCGGTAAAGGAGATTGGAGAGGGATTTCTAGAAACTTCGTGAAGACTCGTACGCCTACACAGGTTGCTAGTCATGCTCAGAAGTACTTCCTCCGCCGTCACACCCAGAACCGCCGCCGCCGGAGATCTAGTCTCTTTGATATCACCACCGACTCGGTGATGGAACCGTGGCCGGAGAAGGAAGAGGAACAAGTGGTGTTGCCGTCAGCTAGGTCGAAACCGGTTCTGCCGGTGCCTCCGTCGTCGAAGATGGCTGAGTTGGACTTGAGTGGGAAGTCGCTGTCGCTGAAGCTTCCGGTATCCAAGCCACCTATTTCTAATGAGAATTTTGGCGGGATACCATTATCGGTGTTGCTTGAAGGTTAA

Predicted protein sequences of Glyma08g40460

Limit To All Plant Sequences

>Glyma08g40460.1   sequence type=predicted peptide   gene model=Glyma08g40460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCSAEKDGIMLFGVRLSVVDNHPTSFRKSASMTNLSQYESPPPHDPNAGYASDDVVHPSRHTRERKRGVPWTEEEHRLFLLGLQNIGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHTQNRRRRRSSLFDITTDSVMEPWPEKEEEQVVLPSARSKPVLPVPPSSKMAELDLSGKSLSLKLPVSKPPISNENFGGIPLSVLLEG*

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