Glyma08g40440 - SoyBase

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Report for Sequence Feature Glyma08g40440

Feature Type:	gene_model
Chromosome:	Gm08
Start:	40183565
stop:	40185792
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g40440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27200	AT	Annotation by Michelle Graham. TAIR10: Domain of unknown function (DUF23) \| chr1:9449812-9451539 REVERSE LENGTH=575	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
PF01697	PFAM	Domain of unknown function	JGI		ISS
UniRef100_B9S2H4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UPF0392 protein RCOM_0530710 n=1 Tax=Ricinus communis RepID=Y232_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KXM5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXM5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g40440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g40440

Paralog	Evidence	Comments
Glyma18g17190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g40440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g293200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g40440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g40440

Limit To All Plant Sequences

>Glyma08g40440.1   sequence type=CDS   gene model=Glyma08g40440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTCATCACCAGACCAAACCCGCAAGAGGAATCAGAATCAGAATCACACGCTGGCGCAAAAATCACTTTTCCTCTGTTTTTCTTTCTTCCTCTTCCTCTTCTTCTTTTCCTCCTCGCACCACTCTTTTTACTCTCACACCTCCCTCCAACCCTCTACTTTGAGTACTTTCCCCACACCCACTCCATTTCCCACCACCAAATTACCAGTTTCCTCCCTCCACGTGCTCGATCGCATCCTCTTCCCCGATCACGTGCTTCTCACGCTCTCCAACCCTCATGTTTTTTCTCCTAAACATTTCCACTGCGTTTATTACAACCTCGTCAAGGGTTCGACTCCGTCGAACTCGAACCCGGTTTTCGACGTTCTCGTCCTTCCGGTTCTTTCCACGGACCGCTACGACGAGTTCCGGTCCATAGCAAGGTGTCCGCTCCCCGGCAAAAAATTCTCCGCCGTCGACTTGAGATGGCGCAGCGGAGACGACGATCGCCAGCCTTTCCGGTTCCCGGTTCAACCGACCGTGCCGCATAGCTTCGACAAGCTAGCGTACGAGGTAGCCTTAGACGGTGACACCGCAGTTGTCTTCGTCAAAGGACTAAACCTCCGACCACACCAAATATCCGACGAAGGCCTACTCCGATGCCACTTCGGACCTCAAAACGGCAAGCATTGGCAAACAACAAAAGCCGTTGCGGCGGCGCAGGAAGTCGTGCGGTGCGCGCTGCCGCAGAGTATTCAGAACAGCCCACACGAGGCTCGCGGAATAATAAGCGTCAGCGTGAGTCACGTGCGGCACGAGGCTATTTTCGACTCGGTCGCTAAAATTGGCGGGTACAGAAAACAAATAAACAGAGTGAACATGAACATGAACAAGAACAAGTTAGAACTTTGCGCGTGTACCATGGTGTGGAACCAGGCACGTGCGATGAAAGAGTGGGTTATTTACCACGCGTGGCTCGGCGTGGAGAAATGGTATATATACGATAACAACAGCGACGATGAAATTGATGACGTGGTTCGAGAGCTTGAGGTAAAAGGTTACAATATTAATAGAGTTGTTTGGCCTTGGATTAAGAGCCAAGAAGCAGGGTTTTCGCATTGTAGTTTGAGGGCAAAAGAGGAATGTAAGTGGGTTGGGTTCTTTGACGTGGACGAGTTTTTCTACTTGAGAGAAATGAAACAGAATGCTCTAATATCAACTGTGGGGAATTTATCGAATTCGATTGCGGAAATAAGGACAGGGTGTCTTAATTTCGGTCCCTCGGAGTTAAGGACTCACCCTAGAAATGGAGTGAGCGTAGGGTATACGTGTCGGCTTCGGACGCCGGAGAGGCACAAGTCGATTGTACGGCCTGATTTGCTTCATGCTAGTCTTTTGAATGTGGTGCACCATTTTGAATTAAAAGAGGGGTTTGGATCACTTAACATGCCTCAATCGGTTGCGGTTATAAACCACTATAAGTACCAGGTTTGGGAAATTTTTAAGGCCAAGTTTTTCAGAAGGGTTGCTACGTATGTGGTGGATTGGAAGGAGGATGCAAACATAGGATCAAAGGACAGAGCTCCTGGGCTGGGAACAGAAGCAATTGAACCAAGTGATTGGAGGTTGAGATTTTGTGAGGTTTGGGACACTCGTCTCAAGGACTTTCTTCTTTCTAATTTTGCTGATCAAGAAACAGGGTTGTTGCCCTGGGAAAGGTCATCAAAATAA

Predicted protein sequences of Glyma08g40440

Limit To All Plant Sequences

>Glyma08g40440.1   sequence type=predicted peptide   gene model=Glyma08g40440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSSPDQTRKRNQNQNHTLAQKSLFLCFSFFLFLFFFSSSHHSFYSHTSLQPSTLSTFPTPTPFPTTKLPVSSLHVLDRILFPDHVLLTLSNPHVFSPKHFHCVYYNLVKGSTPSNSNPVFDVLVLPVLSTDRYDEFRSIARCPLPGKKFSAVDLRWRSGDDDRQPFRFPVQPTVPHSFDKLAYEVALDGDTAVVFVKGLNLRPHQISDEGLLRCHFGPQNGKHWQTTKAVAAAQEVVRCALPQSIQNSPHEARGIISVSVSHVRHEAIFDSVAKIGGYRKQINRVNMNMNKNKLELCACTMVWNQARAMKEWVIYHAWLGVEKWYIYDNNSDDEIDDVVRELEVKGYNINRVVWPWIKSQEAGFSHCSLRAKEECKWVGFFDVDEFFYLREMKQNALISTVGNLSNSIAEIRTGCLNFGPSELRTHPRNGVSVGYTCRLRTPERHKSIVRPDLLHASLLNVVHHFELKEGFGSLNMPQSVAVINHYKYQVWEIFKAKFFRRVATYVVDWKEDANIGSKDRAPGLGTEAIEPSDWRLRFCEVWDTRLKDFLLSNFADQETGLLPWERSSK*

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