Glyma08g40210 - SoyBase

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Report for Sequence Feature Glyma08g40210

Feature Type:	gene_model
Chromosome:	Gm08
Start:	39913382
stop:	39920165
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g40210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G13750	AT	Annotation by Michelle Graham. TAIR10: Purple acid phosphatases superfamily protein \| chr1:4715490-4718091 REVERSE LENGTH=613	SoyBase	E_val: 0	ISS
GO:0006569	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009684	GO-bp	Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003993	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1378	KOG	Purple acid phosphatase	JGI		ISS
PTHR22953	Panther	ACID PHOSPHATASE RELATED	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_I1KXK7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXK7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8VX11	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Diphosphonucleotide phosphatase 1 n=1 Tax=Lupinus luteus RepID=Q8VX11_LUPLU	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma08g40210

Locus	Gene Symbol	Protein Name
	PAP17	Purple acid phosphatase 17 gene
	PAP17	Purple acid phosphatase gene 17

Expression Patterns of Glyma08g40210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g40210

Paralog	Evidence	Comments
Glyma18g17541	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g40210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g291600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g40210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g40210

Limit To All Plant Sequences

>Glyma08g40210.1   sequence type=CDS   gene model=Glyma08g40210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATGAGTGGGATGGGGAACTCAAGAGTGTTAATTTTCTCTTTGCTTGTTCTTGCAACCTTTCAGCAAGTGGTGTCCGATGAGCACCAACCCCTCTCAAAAGTTGCCATTCATAAAACAACACTTGCTCTTGATGAACGTGCTTATATCAAAGCCACTCCTAGTGTCCTTGGCTTGAAGGGACAAAATACAGAATGGGTTACACTGCAATATAGTAATCCAAAACCCACAATAGATGATTGGATTGGAGTGTTTTCTCCTGCAAACTTCAATGCTTCTACCTGCCCTGCAGAAAACATATGGGTCAATCCCCCATTTCTGTGTTCTGCGCCTATCAAGTATCAATATGCCAATTTCTCCAGTCATGGTTACAAGAACACAGGAAAAGGTTCCCTGAAGCTTCAGTTGATTAATCAGAGATCTGACTTTTCATTTGCACTTTTCACGGGTGGCTTAACTAATCCAAAGCTCGTTGCAGTGTCAAATAAAGTATCATTCATCAATCCAAATGCACCAGTATATCCCCGATTAGCACAAGGGAAAACATGGGACGAAATAACTGTAACATGGACAAGTGGATATGGAATCAGTGACGCTGAACCTTTTGTTGAATGGGGCCCTAAAGGAGGGAACCTTGTGAAATCTCCTGCTGGTACACTGACTTTTGATCACAACACCATGTGTGGTGCACCAGCAAGGACTGTTGGATGGCGTGACCCGGGATATATACACACTAGTTTTCTGAAGGAGTTGTGGCCCAACCAAGAGTACAAATACAAGCTGGGACATAGATTATTTAATGGTACCATAATTTGGAGTCAAGAATACCAATTCAAAGCATCTCCTTTTCCTGGTCAAAATTCCTTACAACGTGTAGTCATATTTGGTGATTTGGGAAAGGCCGAAGCTGATGGTTCCAATGAATATAACAATTTCCAGCCTGGTTCACTCAACACTACTAAACAGATCGTTCAAGACTTAAAAGATATAGATATTGTCTTCCACATTGGTGATTTATGCTATGCTAGTGGATACCTTTCACAGTGGGATCAGTTTACTGCACAAATTGAGCCAATTGCATCAACTGTACCTTATATGACAGCAAGTGGCAATCATGAACGTGACTGGCCAGATACTGGATCATTTTATGGGACCTTGGATTCTGGTGGTGAATGTGGTGTACCGGCTCAAACCACGTTTTATGTTCCAGCTGAGAACCGGGAAAAGTTCTGGTACTCAGTTGACTATGGTATGTTCAGATTCTGCATAGCTAACACAGAACTCGATTGGAGAAAAGGATCAGAACAGTATAAATTCATTGAAAATTGCCTAGCAACGGTTGACAGACAAAAACAGCCATGGCTGATATTTCTTGCACATAGGGTACTTGGTTATTCTTCTGCAGGGTTCTATGCTGCAGAAGGCTCATTTGAAGAACCAATGGGAAGGGAGGATCTTCAATATCTCTGGCAGAAGTATAAGGTTGACATAGCAATGTATGGACATGTCCATAACTATGAAAGGACTTGCCCTGTGTATCAGAATATCTGCACCAACAAAGAGAAGAACAATTACAAGGGCTCCTTGGATGGTACAATACATGTAGTGGTTGGAGGAGGAGGAGCATCCCTTGCTGAATTTGCCCCCATAAACACCACATGGAGTATATTTAAAGACCATGACTTTGGATTTGTCAAGCTTACAGCATTTGACCATTCAAACTTCTTGTTTGAGTACAAGAAAAGCAGTGATGGACAAGTCTATGACTCATTCAGAATATCAAGGGAGTACAGGGACATCTTAGCTTGCACTGTTGATAGTTGTCCAGCTACAACACTAGCATCTTGA

Predicted protein sequences of Glyma08g40210

Limit To All Plant Sequences

>Glyma08g40210.1   sequence type=predicted peptide   gene model=Glyma08g40210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMMSGMGNSRVLIFSLLVLATFQQVVSDEHQPLSKVAIHKTTLALDERAYIKATPSVLGLKGQNTEWVTLQYSNPKPTIDDWIGVFSPANFNASTCPAENIWVNPPFLCSAPIKYQYANFSSHGYKNTGKGSLKLQLINQRSDFSFALFTGGLTNPKLVAVSNKVSFINPNAPVYPRLAQGKTWDEITVTWTSGYGISDAEPFVEWGPKGGNLVKSPAGTLTFDHNTMCGAPARTVGWRDPGYIHTSFLKELWPNQEYKYKLGHRLFNGTIIWSQEYQFKASPFPGQNSLQRVVIFGDLGKAEADGSNEYNNFQPGSLNTTKQIVQDLKDIDIVFHIGDLCYASGYLSQWDQFTAQIEPIASTVPYMTASGNHERDWPDTGSFYGTLDSGGECGVPAQTTFYVPAENREKFWYSVDYGMFRFCIANTELDWRKGSEQYKFIENCLATVDRQKQPWLIFLAHRVLGYSSAGFYAAEGSFEEPMGREDLQYLWQKYKVDIAMYGHVHNYERTCPVYQNICTNKEKNNYKGSLDGTIHVVVGGGGASLAEFAPINTTWSIFKDHDFGFVKLTAFDHSNFLFEYKKSSDGQVYDSFRISREYRDILACTVDSCPATTLAS*

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