Report for Sequence Feature Glyma08g40181
Feature Type: gene_model
Chromosome: Gm08
Start: 39889741
stop: 39897339
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g40181
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G24090 AT
Annotation by Michelle Graham. TAIR10: RNase H family protein | chr1:8520834-8522737 FORWARD LENGTH=353
SoyBase E_val: 9.00E-111 ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0004523 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ribonuclease H activity
SoyBase N/A ISS
PTHR10178 Panther
GAG/POL/ENV POLYPROTEIN
JGI ISS
PTHR10178:SF22 Panther
LTR RETROTRANSPOSABLE ELEMENT - RELATED
JGI ISS
PF00075 PFAM
RNase H
JGI ISS
UniRef100_B9T8F6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Nuclease, putative n=1 Tax=Ricinus communis RepID=B9T8F6_RICCO
SoyBase E_val: 3.00E-127 ISS
UniRef100_UPI0002338708 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338708 related cluster n=1 Tax=unknown RepID=UPI0002338708
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g40181
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g40181
Paralog Evidence Comments
Glyma18g17705 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g40181 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g291300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g40181
Transcripts of Glyma08g40181
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g40181.2 sequence type=transcript gene model=Glyma08g40181 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTAACACTGGATAGCAAAACGCCAAACCGTTCTCGTCGTCCTTCGTCTTTCCACTCACAATTCCCAACTTACCAACCCATTTCACTTCACTTCCCCTAGTCAATTAATCGATTCCATTCCACAATGCAGTTTCCTCCGCTTTCCCTGCAACCAAACAGCACCTAATTCCTTCCAAACTCGAGCCTTCTTCTCTGTCATGAACCGCTTGTCGCAGCTCTCATCGTACACCGCCGCCATAGTCGGAAGCACCGTTCGCCTCATCGCGAACCGCTCCCTGCGCCACCGGTGCTGCTCGTTCCCGGCGAAACCAGAGTACCGCGGAATTAGGTCTTTCCGTTCAGAATTCGCGTTGACCGCCGCTCGCTGCTACTCCGCCAAGAAAGGGCGCAAGAGCAAGGCGGAGCCTGAAGTGCCGGCGGTGGTGATGGAGCAGGAGAAAGACGCTTTCTACGTCGTTCGGAAAGGGGACGTTGTTGGAATCTATAACAGTCTCGCTGATTCTCAGGCTCAAGTTGGATCTTCCGTATGCAATCCTCCTGTTAGTGTGTACAAGGGATACTCGTTGTCAAAGGACACCGAGGAATATCTTGTCTCACATGGACTGAAGAATGCTTTATACACAATTAGAGCTACTGATTTGAAAGAGGATTTGTTTGGCATGCTTGTTCCTTGCCCTTTCCAGGAACCTTCTACCAAAGAGGGCACATCAAATAAGGACGTATCTAAACAGAGATCTTTGGGAGTGCTTGCACAAGATGAGAAAGTAATCTCTGAAGATCCCTTCAGAAAGCAAGTCAAGTTAGAATATGCTGAAGTGGCTGAAGCACCTTCACATGCAACTCGGACTTGTTTTGTTGAGTTTGATGGTGCGTCAAAAGGAAATCCTGGAAAAGCTGGTGCTGGGGCTATTCTGCGAGCTAATGATGGAAGCTTGGGTGCGTGAAGGTGTTGGTATAGCAACAAACAATGCTGCTGAATATCGTGCAATGATATTGGGAATGAAATATGCTCTTAAAAAGGGATTTACTGGTATTTGTATCCAAGGTGATTCCAAACTTGTTTGCATGCAGGTTGGCCATTTTATATTCTTCTCTGTTATTTTATTCTAACATTATTAAATGTTAAATGACATTTACACCCCTTCACTTATGTATTTATGTCTTGGTATTCTATATCTAATTGCTCTTTTAAGGCTCTTTGATTTAAATATTCACATAAAAACTATACGTAAAATAAAACTAGTGTGGTGTTTCAACACCCTCCTCAACTCTCCGACTGGATTTACCCTGATCCAGGTAATGTTCACTCGTCCTCCTCCCACCATTCCCTATTGCTGGTTCCATTTCAAATGCGCTATTGACTGTGAGCTACTCATCTGAACCAATTTTAGAGAAACTACAGAAGAACTTTGACAAACTCAACAGTTGATGAAAAGATGGGCTGGTACATGTTGTCATGATTTGCACCTGAACATAGGAGATTGGGTATATGACTATATGTGCACCTCAGACCTTGCTGGCAATATCCTGCCGTTTCCACTATTAGCCACAAATTATGCTAGGCATATTTTGTCCTCTACCAAATTTTAGAGGAAATTGACCCAGTTACCTAGACCTTCCCCCAAATGCCGAAATTCACAATGTCTTCCTTGAGAGTTTACTCAAGCCCCACTATGGTCCACCACTGTCAATTTCTCTACCTGCTGAAATTGTTGACAAGGATCCAGTCCTTGAAACACTTGCAATTCTTGATTGGTAATGGGTTGATGATGCTGATGGACCAAAACAGCAGGTCCTCATCCAGTGGACTGGGATTCACCCTGAAGAAGCCACGTAGGAAGGCTACTATTATCCTAAATGATCTTGACCTTGAGGAAATATTGATGCCCCTTCCACCTTGAGGAAATTTTAATGCCCCCCTCTTCTATTTCTTATCCATCTGCATCCCTAACTGTCATTGTACATCTCTGTATTGAGTCAGTACCTGATATTAAATTTAGGGAATGAAAATATGAGTAGTTCTGTTACAGCTTTCCACGCTGTACTTCATATCTGAAGTTTTGTTTTTCCTGTCCATTTGGCAACAGCTAACTGCATGTAATTGGCAAATTTGCAGTGACTTGAGTACACTTTGAACACATTTCATTCT
Coding sequences of Glyma08g40181
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g40181.1 sequence type=CDS gene model=Glyma08g40181 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACCGCTTGTCGCAGCTCTCATCGTACACCGCCGCCATAGTCGGAAGCACCGTTCGCCTCATCGCGAACCGCTCCCTGCGCCACCGGTGCTGCTCGTTCCCGGCGAAACCAGAGTACCGCGGAATTAGGTCTTTCCGTTCAGAATTCGCGTTGACCGCCGCTCGCTGCTACTCCGCCAAGAAAGGGCGCAAGAGCAAGGCGGAGCCTGAAGTGCCGGCGGTGGTGATGGAGCAGGAGAAAGACGCTTTCTACGTCGTTCGGAAAGGGGACGTTGTTGGAATCTATAACAGTCTCGCTGATTCTCAGGCTCAAGTTGGATCTTCCGTATGCAATCCTCCTGTTAGTGTGTACAAGGGATACTCGTTGTCAAAGGACACCGAGGAATATCTTGTCTCACATGGACTGAAGAATGCTTTATACACAATTAGAGCTACTGATTTGAAAGAGGATTTGTTTGGCATGCTTGTTCCTTGCCCTTTCCAGGAACCTTCTACCAAAGAGGGCACATCAAATAAGGACGTATCTAAACAGAGATCTTTGGGAGTGCTTGCACAAGATGAGAAAGTAATCTCTGAAGATCCCTTCAGAAAGCAAGTCAAGTTAGAATATGCTGAAGTGGCTGAAGCACCTTCACATGCAACTCGGACTTGTTTTGTTGAGTTTGATGGTGCGTCAAAAGGAAATCCTGGAAAAGCTGGTGCTGGGGCTATTCTGCGAGCTAATGATGGAAGCTTGATTTGTAGGGTGCGTGAAGGTGTTGGTATAGCAACAAACAATGCTGCTGAATATCGTGCAATGATATTGGGAATGAAATATGCTCTTAAAAAGGGATTTACTGGTATTTGTATCCAAGGTGATTCCAAACTTGTTTGCATGCAGATTGATGGTTCCTGGAAGGTCAAGAATGAAAACTTGTTTACATTGTATAATGTGGCCAAAGAACTCAAGGATAAATTTTCCTCATTCCAGATCAGTCATGTTCTAAGGAACTTCAACTCTGATGCTGACGCTCAAGCAAATTTGGCTATCAATCTTGTAGATGGCCAAGTCCAGGAAGAGTGTGTGTAA
>Glyma08g40181.2 sequence type=CDS gene model=Glyma08g40181 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACCGCTTGTCGCAGCTCTCATCGTACACCGCCGCCATAGTCGGAAGCACCGTTCGCCTCATCGCGAACCGCTCCCTGCGCCACCGGTGCTGCTCGTTCCCGGCGAAACCAGAGTACCGCGGAATTAGGTCTTTCCGTTCAGAATTCGCGTTGACCGCCGCTCGCTGCTACTCCGCCAAGAAAGGGCGCAAGAGCAAGGCGGAGCCTGAAGTGCCGGCGGTGGTGATGGAGCAGGAGAAAGACGCTTTCTACGTCGTTCGGAAAGGGGACGTTGTTGGAATCTATAACAGTCTCGCTGATTCTCAGGCTCAAGTTGGATCTTCCGTATGCAATCCTCCTGTTAGTGTGTACAAGGGATACTCGTTGTCAAAGGACACCGAGGAATATCTTGTCTCACATGGACTGAAGAATGCTTTATACACAATTAGAGCTACTGATTTGAAAGAGGATTTGTTTGGCATGCTTGTTCCTTGCCCTTTCCAGGAACCTTCTACCAAAGAGGGCACATCAAATAAGGACGTATCTAAACAGAGATCTTTGGGAGTGCTTGCACAAGATGAGAAAGTAATCTCTGAAGATCCCTTCAGAAAGCAAGTCAAGTTAGAATATGCTGAAGTGGCTGAAGCACCTTCACATGCAACTCGGACTTGTTTTGTTGAGTTTGATGGTGCGTCAAAAGGAAATCCTGGAAAAGCTGGTGCTGGGGCTATTCTGCGAGCTAATGATGGAAGCTTGGGTGCGTGA
Predicted protein sequences of Glyma08g40181
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g40181.1 sequence type=predicted peptide gene model=Glyma08g40181 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNRLSQLSSYTAAIVGSTVRLIANRSLRHRCCSFPAKPEYRGIRSFRSEFALTAARCYSAKKGRKSKAEPEVPAVVMEQEKDAFYVVRKGDVVGIYNSLADSQAQVGSSVCNPPVSVYKGYSLSKDTEEYLVSHGLKNALYTIRATDLKEDLFGMLVPCPFQEPSTKEGTSNKDVSKQRSLGVLAQDEKVISEDPFRKQVKLEYAEVAEAPSHATRTCFVEFDGASKGNPGKAGAGAILRANDGSLICRVREGVGIATNNAAEYRAMILGMKYALKKGFTGICIQGDSKLVCMQIDGSWKVKNENLFTLYNVAKELKDKFSSFQISHVLRNFNSDADAQANLAINLVDGQVQEECV*
>Glyma08g40181.2 sequence type=predicted peptide gene model=Glyma08g40181 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNRLSQLSSYTAAIVGSTVRLIANRSLRHRCCSFPAKPEYRGIRSFRSEFALTAARCYSAKKGRKSKAEPEVPAVVMEQEKDAFYVVRKGDVVGIYNSLADSQAQVGSSVCNPPVSVYKGYSLSKDTEEYLVSHGLKNALYTIRATDLKEDLFGMLVPCPFQEPSTKEGTSNKDVSKQRSLGVLAQDEKVISEDPFRKQVKLEYAEVAEAPSHATRTCFVEFDGASKGNPGKAGAGAILRANDGSLGA*