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Report for Sequence Feature Glyma08g40181

Feature Type:gene_model
Chromosome:Gm08
Start:39889741
stop:39897339
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G24090AT Annotation by Michelle Graham. TAIR10: RNase H family protein | chr1:8520834-8522737 FORWARD LENGTH=353 SoyBaseE_val: 9.00E-111ISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0004523GO-mf Annotation by Michelle Graham. GO Molecular Function: ribonuclease H activity SoyBaseN/AISS
PTHR10178Panther GAG/POL/ENV POLYPROTEIN JGI ISS
PTHR10178:SF22Panther LTR RETROTRANSPOSABLE ELEMENT - RELATED JGI ISS
PF00075PFAM RNase H JGI ISS
UniRef100_B9T8F6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nuclease, putative n=1 Tax=Ricinus communis RepID=B9T8F6_RICCO SoyBaseE_val: 3.00E-127ISS
UniRef100_UPI0002338708UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338708 related cluster n=1 Tax=unknown RepID=UPI0002338708 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g40181 not represented in the dataset

Glyma08g40181 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma18g17705 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g291300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g40181.2   sequence type=transcript   gene model=Glyma08g40181   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTAACACTGGATAGCAAAACGCCAAACCGTTCTCGTCGTCCTTCGTCTTTCCACTCACAATTCCCAACTTACCAACCCATTTCACTTCACTTCCCCTAGTCAATTAATCGATTCCATTCCACAATGCAGTTTCCTCCGCTTTCCCTGCAACCAAACAGCACCTAATTCCTTCCAAACTCGAGCCTTCTTCTCTGTCATGAACCGCTTGTCGCAGCTCTCATCGTACACCGCCGCCATAGTCGGAAGCACCGTTCGCCTCATCGCGAACCGCTCCCTGCGCCACCGGTGCTGCTCGTTCCCGGCGAAACCAGAGTACCGCGGAATTAGGTCTTTCCGTTCAGAATTCGCGTTGACCGCCGCTCGCTGCTACTCCGCCAAGAAAGGGCGCAAGAGCAAGGCGGAGCCTGAAGTGCCGGCGGTGGTGATGGAGCAGGAGAAAGACGCTTTCTACGTCGTTCGGAAAGGGGACGTTGTTGGAATCTATAACAGTCTCGCTGATTCTCAGGCTCAAGTTGGATCTTCCGTATGCAATCCTCCTGTTAGTGTGTACAAGGGATACTCGTTGTCAAAGGACACCGAGGAATATCTTGTCTCACATGGACTGAAGAATGCTTTATACACAATTAGAGCTACTGATTTGAAAGAGGATTTGTTTGGCATGCTTGTTCCTTGCCCTTTCCAGGAACCTTCTACCAAAGAGGGCACATCAAATAAGGACGTATCTAAACAGAGATCTTTGGGAGTGCTTGCACAAGATGAGAAAGTAATCTCTGAAGATCCCTTCAGAAAGCAAGTCAAGTTAGAATATGCTGAAGTGGCTGAAGCACCTTCACATGCAACTCGGACTTGTTTTGTTGAGTTTGATGGTGCGTCAAAAGGAAATCCTGGAAAAGCTGGTGCTGGGGCTATTCTGCGAGCTAATGATGGAAGCTTGGGTGCGTGAAGGTGTTGGTATAGCAACAAACAATGCTGCTGAATATCGTGCAATGATATTGGGAATGAAATATGCTCTTAAAAAGGGATTTACTGGTATTTGTATCCAAGGTGATTCCAAACTTGTTTGCATGCAGGTTGGCCATTTTATATTCTTCTCTGTTATTTTATTCTAACATTATTAAATGTTAAATGACATTTACACCCCTTCACTTATGTATTTATGTCTTGGTATTCTATATCTAATTGCTCTTTTAAGGCTCTTTGATTTAAATATTCACATAAAAACTATACGTAAAATAAAACTAGTGTGGTGTTTCAACACCCTCCTCAACTCTCCGACTGGATTTACCCTGATCCAGGTAATGTTCACTCGTCCTCCTCCCACCATTCCCTATTGCTGGTTCCATTTCAAATGCGCTATTGACTGTGAGCTACTCATCTGAACCAATTTTAGAGAAACTACAGAAGAACTTTGACAAACTCAACAGTTGATGAAAAGATGGGCTGGTACATGTTGTCATGATTTGCACCTGAACATAGGAGATTGGGTATATGACTATATGTGCACCTCAGACCTTGCTGGCAATATCCTGCCGTTTCCACTATTAGCCACAAATTATGCTAGGCATATTTTGTCCTCTACCAAATTTTAGAGGAAATTGACCCAGTTACCTAGACCTTCCCCCAAATGCCGAAATTCACAATGTCTTCCTTGAGAGTTTACTCAAGCCCCACTATGGTCCACCACTGTCAATTTCTCTACCTGCTGAAATTGTTGACAAGGATCCAGTCCTTGAAACACTTGCAATTCTTGATTGGTAATGGGTTGATGATGCTGATGGACCAAAACAGCAGGTCCTCATCCAGTGGACTGGGATTCACCCTGAAGAAGCCACGTAGGAAGGCTACTATTATCCTAAATGATCTTGACCTTGAGGAAATATTGATGCCCCTTCCACCTTGAGGAAATTTTAATGCCCCCCTCTTCTATTTCTTATCCATCTGCATCCCTAACTGTCATTGTACATCTCTGTATTGAGTCAGTACCTGATATTAAATTTAGGGAATGAAAATATGAGTAGTTCTGTTACAGCTTTCCACGCTGTACTTCATATCTGAAGTTTTGTTTTTCCTGTCCATTTGGCAACAGCTAACTGCATGTAATTGGCAAATTTGCAGTGACTTGAGTACACTTTGAACACATTTCATTCT

>Glyma08g40181.1   sequence type=CDS   gene model=Glyma08g40181   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCGCTTGTCGCAGCTCTCATCGTACACCGCCGCCATAGTCGGAAGCACCGTTCGCCTCATCGCGAACCGCTCCCTGCGCCACCGGTGCTGCTCGTTCCCGGCGAAACCAGAGTACCGCGGAATTAGGTCTTTCCGTTCAGAATTCGCGTTGACCGCCGCTCGCTGCTACTCCGCCAAGAAAGGGCGCAAGAGCAAGGCGGAGCCTGAAGTGCCGGCGGTGGTGATGGAGCAGGAGAAAGACGCTTTCTACGTCGTTCGGAAAGGGGACGTTGTTGGAATCTATAACAGTCTCGCTGATTCTCAGGCTCAAGTTGGATCTTCCGTATGCAATCCTCCTGTTAGTGTGTACAAGGGATACTCGTTGTCAAAGGACACCGAGGAATATCTTGTCTCACATGGACTGAAGAATGCTTTATACACAATTAGAGCTACTGATTTGAAAGAGGATTTGTTTGGCATGCTTGTTCCTTGCCCTTTCCAGGAACCTTCTACCAAAGAGGGCACATCAAATAAGGACGTATCTAAACAGAGATCTTTGGGAGTGCTTGCACAAGATGAGAAAGTAATCTCTGAAGATCCCTTCAGAAAGCAAGTCAAGTTAGAATATGCTGAAGTGGCTGAAGCACCTTCACATGCAACTCGGACTTGTTTTGTTGAGTTTGATGGTGCGTCAAAAGGAAATCCTGGAAAAGCTGGTGCTGGGGCTATTCTGCGAGCTAATGATGGAAGCTTGATTTGTAGGGTGCGTGAAGGTGTTGGTATAGCAACAAACAATGCTGCTGAATATCGTGCAATGATATTGGGAATGAAATATGCTCTTAAAAAGGGATTTACTGGTATTTGTATCCAAGGTGATTCCAAACTTGTTTGCATGCAGATTGATGGTTCCTGGAAGGTCAAGAATGAAAACTTGTTTACATTGTATAATGTGGCCAAAGAACTCAAGGATAAATTTTCCTCATTCCAGATCAGTCATGTTCTAAGGAACTTCAACTCTGATGCTGACGCTCAAGCAAATTTGGCTATCAATCTTGTAGATGGCCAAGTCCAGGAAGAGTGTGTGTAA

>Glyma08g40181.2   sequence type=CDS   gene model=Glyma08g40181   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCGCTTGTCGCAGCTCTCATCGTACACCGCCGCCATAGTCGGAAGCACCGTTCGCCTCATCGCGAACCGCTCCCTGCGCCACCGGTGCTGCTCGTTCCCGGCGAAACCAGAGTACCGCGGAATTAGGTCTTTCCGTTCAGAATTCGCGTTGACCGCCGCTCGCTGCTACTCCGCCAAGAAAGGGCGCAAGAGCAAGGCGGAGCCTGAAGTGCCGGCGGTGGTGATGGAGCAGGAGAAAGACGCTTTCTACGTCGTTCGGAAAGGGGACGTTGTTGGAATCTATAACAGTCTCGCTGATTCTCAGGCTCAAGTTGGATCTTCCGTATGCAATCCTCCTGTTAGTGTGTACAAGGGATACTCGTTGTCAAAGGACACCGAGGAATATCTTGTCTCACATGGACTGAAGAATGCTTTATACACAATTAGAGCTACTGATTTGAAAGAGGATTTGTTTGGCATGCTTGTTCCTTGCCCTTTCCAGGAACCTTCTACCAAAGAGGGCACATCAAATAAGGACGTATCTAAACAGAGATCTTTGGGAGTGCTTGCACAAGATGAGAAAGTAATCTCTGAAGATCCCTTCAGAAAGCAAGTCAAGTTAGAATATGCTGAAGTGGCTGAAGCACCTTCACATGCAACTCGGACTTGTTTTGTTGAGTTTGATGGTGCGTCAAAAGGAAATCCTGGAAAAGCTGGTGCTGGGGCTATTCTGCGAGCTAATGATGGAAGCTTGGGTGCGTGA

>Glyma08g40181.1   sequence type=predicted peptide   gene model=Glyma08g40181   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRLSQLSSYTAAIVGSTVRLIANRSLRHRCCSFPAKPEYRGIRSFRSEFALTAARCYSAKKGRKSKAEPEVPAVVMEQEKDAFYVVRKGDVVGIYNSLADSQAQVGSSVCNPPVSVYKGYSLSKDTEEYLVSHGLKNALYTIRATDLKEDLFGMLVPCPFQEPSTKEGTSNKDVSKQRSLGVLAQDEKVISEDPFRKQVKLEYAEVAEAPSHATRTCFVEFDGASKGNPGKAGAGAILRANDGSLICRVREGVGIATNNAAEYRAMILGMKYALKKGFTGICIQGDSKLVCMQIDGSWKVKNENLFTLYNVAKELKDKFSSFQISHVLRNFNSDADAQANLAINLVDGQVQEECV*

>Glyma08g40181.2   sequence type=predicted peptide   gene model=Glyma08g40181   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRLSQLSSYTAAIVGSTVRLIANRSLRHRCCSFPAKPEYRGIRSFRSEFALTAARCYSAKKGRKSKAEPEVPAVVMEQEKDAFYVVRKGDVVGIYNSLADSQAQVGSSVCNPPVSVYKGYSLSKDTEEYLVSHGLKNALYTIRATDLKEDLFGMLVPCPFQEPSTKEGTSNKDVSKQRSLGVLAQDEKVISEDPFRKQVKLEYAEVAEAPSHATRTCFVEFDGASKGNPGKAGAGAILRANDGSLGA*







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