Glyma08g40171 - SoyBase

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Report for Sequence Feature Glyma08g40171

Feature Type:	gene_model
Chromosome:	Gm08
Start:	39874966
stop:	39875334
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g40171

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF03372	PFAM	Endonuclease/Exonuclease/phosphatase family	JGI		ISS
UniRef100_A2Q4W5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Reverse transcriptase-beet retrotransposon, putative n=1 Tax=Medicago truncatula RepID=A2Q4W5_MEDTR	SoyBase	E_val: 6.00E-13	ISS
UniRef100_I1J6G2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6G2_SOYBN	SoyBase	E_val: 3.00E-23	ISS

Expression Patterns of Glyma08g40171

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g40171 not represented in the dataset	Glyma08g40171 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g40171 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g291200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g40171

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g40171

Limit To All Plant Sequences

>Glyma08g40171.1   sequence type=CDS   gene model=Glyma08g40171   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATAGTTTCTTTCAATGTTAGAGGGCTGGGGAAATCAATAAAGTGGAAGTTCATCAGAAATCTAGAACGCAAGGAGGGGGTACAACTCTTATGCTTACAAGAAACTAAAAAAGAGGCCGTGTCTAGAGAACTTTGCATTGCCTTGTGGGGGAATTGTGATGTCCAGTGGTTCTTTTCACCTTCTATTGGAGCAGCTGGTGGGTTATTGTGCTTATGGGATTCTAATTCCTTCTCTTTGTCATCATATTTTCAAGGAGAAGACCACGTTAATTTGGAGGATATTTGGAAGGAGAAAAATTGTGAAGTGGTGATAGTTAATGTTTACTCTTCATGTGATAGAATAAAAAAGCTCAATGATTGGTAA

Predicted protein sequences of Glyma08g40171

Limit To All Plant Sequences

>Glyma08g40171.1   sequence type=predicted peptide   gene model=Glyma08g40171   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKIVSFNVRGLGKSIKWKFIRNLERKEGVQLLCLQETKKEAVSRELCIALWGNCDVQWFFSPSIGAAGGLLCLWDSNSFSLSSYFQGEDHVNLEDIWKEKNCEVVIVNVYSSCDRIKKLNDW*

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