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Report for Sequence Feature Glyma08g40150

Feature Type:gene_model
Chromosome:Gm08
Start:39850443
stop:39855121
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G70210AT Annotation by Michelle Graham. TAIR10: CYCLIN D1;1 | chr1:26440015-26441980 FORWARD LENGTH=339 SoyBaseE_val: 2.00E-131ISS
GO:0000080GO-bp Annotation by Michelle Graham. GO Biological Process: G1 phase of mitotic cell cycle SoyBaseN/AISS
GO:0000278GO-bp Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle SoyBaseN/AISS
GO:0010440GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression SoyBaseN/AISS
GO:0042023GO-bp Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication SoyBaseN/AISS
GO:0045736GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of cyclin-dependent protein kinase activity SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016538GO-mf Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase regulator activity SoyBaseN/AISS
KOG0656 KOG G1/S-specific cyclin D JGI ISS
PTHR10177Panther CYCLINS JGI ISS
PTHR10177:SF76Panther CYCLIN-D JGI ISS
PF00134PFAM Cyclin, N-terminal domain JGI ISS
PF02984PFAM Cyclin, C-terminal domain JGI ISS
UniRef100_G7LFF3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cyclin-D1-1 n=1 Tax=Medicago truncatula RepID=G7LFF3_MEDTR SoyBaseE_val: 3.00E-159ISS
UniRef100_I1KXK2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXK2_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma18g17810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g291000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g40150.1   sequence type=CDS   gene model=Glyma08g40150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCGGAACCTCCGCTGCCGCCGGCGCTCCTCATGTCGGTTTCCTGCCTCTCCGACTACGACCTCCTCTGTGGCGAGGACACCTCCGGAGTCCTCTCCGGAGAGTCGCCGGAGTGCTCCTCATCCGACATCGGCTCCTCACCACTTCCGCCGTCACCTCCGCCGTCGCCGACGATGACGGAGGATTGTTATTCCATCGCGAGCTTCATCGAGCACGAGCGCAACTTCGTCCCCGGATTCGAGTACCTGTCGAGGTTCCAATCTCGCTCCCTCGACGCCAACGCCAGAGAAGAATCCGTTGCATGGATTCTCAAGGTACACGCGTATTATGGCTTTCAGCCTTTGACGGCGTACCTCGCCGTCAACTATATGGATCGGTTTTTGGATTCTAGCCAGTTGCCGGAAACAAATGGGTGGCCTCTGCAACTTCTATCTGTTGCATGCTTGTCTTTGGCAGCAAAAATGGAGGAACCTCTTGTTCCATCTCTCTTGGACCTTCAGATAGAAGGTGCCAAGTACATATTTGAACCGAGAACAATTCGTAGGATGGAGCTACTTGTTCTGGGTGTCTTGGATTGGAGGCTAAGATCAGTAACCCCACTTTGCTTCCTCGTTTTCTTTGCGTGCAAAGCAGATTCAACTGGAACTTTTACCCGGTTCCTCATTTCCCGGGCTACAGAAATCATCGTATCTAATATCCAAGAGGCTAGCTTTCTTGCTTACAGGCCATCATGCATTGCTGCTGCAGCCATACTCACTGCAGCTAATGAAATTCCTAATTGGTCTGTGGTTAAGCCCGAGCAAGCTGAGTCCTGGTGTCAGGGAATAAGAAAAGAAAAAGTAATAGGGTGCTACCAGTTGATGCAAGAACTTGTGATTAACAATAACCAAAGGAAACTCCCTACTAAAGTGTTGCCGCAGCTGCGAGTAACAACTCGGACCCGAATGAGGTCAAGTACTGTCTCATCATTCTCATCAACATCATCATCATCCTCTTCAACCTCCTTCTCCTTGTCTTGTAAGAGGAGGAAATTAAATAATCGTTTGTGGGTAGATGATGAGAAAGGAAACTCCGAGTAA

>Glyma08g40150.1   sequence type=predicted peptide   gene model=Glyma08g40150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNAEPPLPPALLMSVSCLSDYDLLCGEDTSGVLSGESPECSSSDIGSSPLPPSPPPSPTMTEDCYSIASFIEHERNFVPGFEYLSRFQSRSLDANAREESVAWILKVHAYYGFQPLTAYLAVNYMDRFLDSSQLPETNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQIEGAKYIFEPRTIRRMELLVLGVLDWRLRSVTPLCFLVFFACKADSTGTFTRFLISRATEIIVSNIQEASFLAYRPSCIAAAAILTAANEIPNWSVVKPEQAESWCQGIRKEKVIGCYQLMQELVINNNQRKLPTKVLPQLRVTTRTRMRSSTVSSFSSTSSSSSSTSFSLSCKRRKLNNRLWVDDEKGNSE*







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