Report for Sequence Feature Glyma08g40140
Feature Type: gene_model
Chromosome: Gm08
Start: 39838189
stop: 39842254
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g40140
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G10522 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3470009-3471291 FORWARD LENGTH=179
SoyBase E_val: 5.00E-38 ISS
GO:0009642 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to light intensity
SoyBase N/A ISS
GO:0010468 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of gene expression
SoyBase N/A ISS
GO:0042646 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plastid nucleoid
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_G7IS13 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7IS13_MEDTR
SoyBase E_val: 7.00E-12 ISS
UniRef100_I1KXK1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXK1_SOYBN
SoyBase E_val: 2.00E-115 ISS
Expression Patterns of Glyma08g40140
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g40140
Paralog Evidence Comments
Glyma18g17890 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g40140 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g290900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g40140
Coding sequences of Glyma08g40140
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g40140.1 sequence type=CDS gene model=Glyma08g40140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTGCTTTTCACTCCCTCTCCCGTAACGGTTACTCTCTCTCCCAGAAAACCATTTCCCTCAAACGCTCTTACTCTGCACCACTGTTTCCCTCCCTTCTCTGCAAAACCCATTTCCAGAAATTCCTTCACATGCGCTCTCACACATTCACCCACCCACACGCACGTGTACCCCGACCCAGTTCCCGAATTCGCAGAACACGAGACCCATAAGTTCAAAGTTGAACTCTTTCGGAAGCTTTCGGAAGATGACGTGGACGAGTTCGGGGACGACCTTGATGCGGTTGTTGCCGTTTGCGCGCAGATATTTAGTGAGTTTTTGCACAAGGAATATGGAGGTCCTGGGACATTGTTGGTGGAGCCATTCACGGATATGATGGTTGCTCTAAAGAAGAAGAAACTACCAGGAGCAGCTCTGGCTGCAAGAGCGTCACTATTATGGGCACAAAATTTTGTTGATAAGGATTGGGAAGTTTGGAACTCAAAAATTTAA
Predicted protein sequences of Glyma08g40140
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g40140.1 sequence type=predicted peptide gene model=Glyma08g40140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLLFTPSPVTVTLSPRKPFPSNALTLHHCFPPFSAKPISRNSFTCALTHSPTHTHVYPDPVPEFAEHETHKFKVELFRKLSEDDVDEFGDDLDAVVAVCAQIFSEFLHKEYGGPGTLLVEPFTDMMVALKKKKLPGAALAARASLLWAQNFVDKDWEVWNSKI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
