Glyma08g39990 - SoyBase

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Report for Sequence Feature Glyma08g39990

Feature Type:	gene_model
Chromosome:	Gm08
Start:	39668109
stop:	39670009
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g39990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G25970	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr3:9500116-9502221 REVERSE LENGTH=701	SoyBase	E_val: 3.00E-147	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF96	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7LFI3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat protein n=1 Tax=Medicago truncatula RepID=G7LFI3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KXJ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KXJ1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g39990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g39990

Paralog	Evidence	Comments
Glyma18g18220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g39990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g289800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g39990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g39990

Limit To All Plant Sequences

>Glyma08g39990.2   sequence type=CDS   gene model=Glyma08g39990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCCACAGAGATACCGTGTCTTGGAACACCATAATTTCTGCTTATGTAAGCTCCGGTGACCGGGACACCACATGGAAAATCCTCGGTGCCATGAGAAGGTCTGCACTTGCATTTGAAAGCTGCACATTTGGGAGCATTCTCAAGGGTGTTGCCCGTGCTGGCGAGCTCCAGCTCGGTTTTGATTGTAAAATTGTGAAACATGGGCTGGAATTGTTTAACACTGTCTGCAATGCCACTATCATGGCTTATTCAGAGTGCTGCTCCTTCGAAGATGCTGAGAGAGTGTTTGATGGTGCTGTCCAGTGTCGTGATCTGGTTGCATGGAATTCCATGCTTGGTGCTTACTTAATGCATGAGAAAGAAGATCTTGCATTTAAAGTTTTCGTTGATATGCAGAATTTTGGGTTTGAGCCTGATCCTTATACATACACTGGGATTGTCAGTGCTTGTTCTGTGCAAGAGAATAAAACTTGTGGAAAATGTTTACAAGGGTTGGTGATAAAAAGCAGTCTTGACTATTCTGTGCCAGTTTCTAATGCTTTGATTACCTTGTATATCAGATTTAATGATAGCATGGAAGATGCATTTAGAATATTCTTTTCCATGGATCTTAAAGATTGTTGCACTTGGAACTCCATTTTGGTAGGATGTGTACAAGGTGGTTTGAGTGAAGATGCCTTGAGGTTATTTTTACTGATGAGATGTCTGGTCATAGAAATTGACCATTATACTTTTTCAGCTGTCATAAGATCTTGCTCAGATTTAGCAACTCTACAGTTAGAAGATGCTAGGAAATATTTTGAAGCAACTTCCAAAGATGCTGCAATTGTTTGGAATCCAATCATCTTTGGTTATGCACAACATGGACAAGGAAACATTGCACTTGACCTCTTTTACTTAATGAAAGAGAGAAAGGTGAAACCTGATCATATAGCCTTTGTTGCAGTTCTTACTGCGTGTAGTCATAATGGGCTGGAGCACTTTGCTTGTGCAATTGATCTCTATGGTAGGGCAGGGCATCTTAAGAAGGCAAAAGCTTTGGTTGAAACAATGCCTTTTGAAGCTGATGAAATGGTGTTGAAAAATTTATTAGGTGCCTGTAGATTTTGCGTTGATATTGAATTAGCTAGTCAAATAGCAAAAAATTTGCTAGAGCCGGAGCCTGAGGAGCCCTGCACGTATGTTATACTCTCCGAAATGTATGGGTGTTTCAAGATGTGGGATGAGAAGGCTAGTGTAACAAGGATGATTCGAGATAGGGGAGTGAAAAAGGTTCCAGGTTGGAGTTGGATAGAAGCGAAAAATAAAGTGCACGCTTTCAATGCTGAAGATCATTCCCATCCCCAATGTGAGGAGATATACATACTACTACAACACCTAAAAGAGGGAATTAAGTTATTTGATAATTTTGTCGATCAGTTTAGATAA

Predicted protein sequences of Glyma08g39990

Limit To All Plant Sequences

>Glyma08g39990.2   sequence type=predicted peptide   gene model=Glyma08g39990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRHRDTVSWNTIISAYVSSGDRDTTWKILGAMRRSALAFESCTFGSILKGVARAGELQLGFDCKIVKHGLELFNTVCNATIMAYSECCSFEDAERVFDGAVQCRDLVAWNSMLGAYLMHEKEDLAFKVFVDMQNFGFEPDPYTYTGIVSACSVQENKTCGKCLQGLVIKSSLDYSVPVSNALITLYIRFNDSMEDAFRIFFSMDLKDCCTWNSILVGCVQGGLSEDALRLFLLMRCLVIEIDHYTFSAVIRSCSDLATLQLEDARKYFEATSKDAAIVWNPIIFGYAQHGQGNIALDLFYLMKERKVKPDHIAFVAVLTACSHNGLEHFACAIDLYGRAGHLKKAKALVETMPFEADEMVLKNLLGACRFCVDIELASQIAKNLLEPEPEEPCTYVILSEMYGCFKMWDEKASVTRMIRDRGVKKVPGWSWIEAKNKVHAFNAEDHSHPQCEEIYILLQHLKEGIKLFDNFVDQFR*

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