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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G23890 | AT | Annotation by Michelle Graham. TAIR10: NHL domain-containing protein | chr1:8438900-8440803 REVERSE LENGTH=400 | SoyBase | E_val: 5.00E-89 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR13833 | Panther | ZINC FINGER PROTEIN TRANSCRIPTION FACTOR | JGI | ISS | |
| PTHR13833:SF16 | Panther | NHL REPEAT-CONTAINING PROTEIN | JGI | ISS | |
| UniRef100_F4I7N5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NHL domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4I7N5_ARATH | SoyBase | E_val: 2.00E-86 | ISS |
| UniRef100_I1KXI5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXI5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g39920 not represented in the dataset |
Glyma08g39920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g288900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g39920.2 sequence type=transcript gene model=Glyma08g39920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGCCCAAATCAAAATATTGGTCCAGGGAAGATAAAAATATCTTAACTTGGAGTGAGTTGCACTTGCACAGAGGAGGGGAGACTAGAGAGCAGAGGGCCTCTGGTCAAGTTGCAATATAAAAAAATACCAAACTTTTTCTTTTCTTCTACACTACTTCGCCCACAAGGAACCCTTCCTTTTTCCATCACTACTAAGTACTAACACTGAAACTTGTGCTTACTCTTGCAGCAAAGTGAATAATGGCTTCACTTTCCACCTTCCTCACACTCACTCTCTTCTTCCTCTCACACGTTAACGCCAAAGAAATCGTCATCACCGAAGAGGGTTACACCGTGACCACCGTATTCGACGGCCACAAGCCTCACATCTTCCCTTTCACCGTTCTCCAGCGACCCTTTTCCTCCGATCTCATCCTTCTCGATTCCGTCAACAGCACTTTCTACACGGCGCAATTCCCCATTACTGAAGAAAGCGTTTTCACGAGGCTTTCTGGCGATGGGTCTGTGGGGTATTCTGATGGGGACGTGGGTTCTGCTCGGTTCGCCAAACCCAGAAGCTTTGCTTTTGATATGAGAGGGAATGTGTATGTTGCTGATAAGTCCAACCGTGCAATAAGGAAAATTAGTGCCAAGGGTGTGACCACGATTGCTGGGGGAGAGTTCTCAGAAAAGTCAAGAACAAAGGATGGGCCTGCACTTAATGCATCATTTTCAAATGATTTTGACCTGACTTTCATTCCTGGGCTGTGTGCTTTGCTCGTGTCAGATCACATGCATAGATTGGTCCGCCAGATTAATTTGATGGAGGAGGATTGCACCCTTGGTTCTAAACCTGGACTAGGTGCAGTTATGACTTGGACTCTTGGATTAGGACTTTCATGCTTACTTGGCTTAGTAATTGGAATTGTGAAAGGCACCAACCCTTGCCACTTCACCGAGACATGGAAGCGTTACCTAACCAGTCTGGGGAAGCTAGCACAGACGCTCTTCTTCGGCGCCAAAAGCGCAATTGCTAGCTGCAGTTGCTCCTCTGTTTACAAAATCCTGATGAGCTTTTGGAGATTGAGTCTCTCTCATCTTGTTTGCATGTCTAGAATTAGAATCAACATAGTTTCTCCAAGGCCACATCTGGAATCAGTGTCTTTGCTAGATTTAGATGCCTGCAATAGCGGTGAGGTAACAAAGTCAGGTAAGTATTATGACCAATTGAAGGATTTGATGAGTTTTGATGAAGATTCAAACAATGGCAAGGCAACCTTTAACAAAGGAAATGATAGCATAGGAAGGAGGAATGTGTGCTATGAAGGTGATGTCATGATGAAGGCTAACATGGGCTTTGTAGAGACACCTAAAGATAACAATAACATTGTTCGTCAAGAATCTTCTGTGTGTAAAATGGGTATTGTGAAGCGTAGATGAAGTTATTTGTAAGACATGAACTATGTTATGAAACTAGCATGCATATATTTTGTCACCAGCAACCATCTTTTTTGGCTTCTTTTGCTATCTAATAGTATGTGTTTGGTTTACTGTTGAGTGACCCCAAATGGTCGTTGAATCATAAGT
>Glyma08g39920.1 sequence type=CDS gene model=Glyma08g39920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCACTTTCCACCTTCCTCACACTCACTCTCTTCTTCCTCTCACACGTTAACGCCAAAGAAATCGTCATCACCGAAGAGGGTTACACCGTGACCACCGTATTCGACGGCCACAAGCCTCACATCTTCCCTTTCACCGTTCTCCAGCGACCCTTTTCCTCCGATCTCATCCTTCTCGATTCCGTCAACAGCACTTTCTACACGGCGCAATTCCCCATTACTGAAGAAAGCGTTTTCACGAGGCTTTCTGGCGATGGGTCTGTGGGGTATTCTGATGGGGACGTGGGTTCTGCTCGGTTCGCCAAACCCAGAAGCTTTGCTTTTGATATGAGAGGGAATGTGTATGTTGCTGATAAGTCCAACCGTGCAATAAGGAAAATTAGTGCCAAGGGTGTGACCACGATTGCTGGGGGAGAGTTCTCAGAAAAGTCAAGAACAAAGGATGGGCCTGCACTTAATGCATCATTTTCAAATGATTTTGACCTGACTTTCATTCCTGGGCTGTGTGCTTTGCTCGTGTCAGATCACATGCATAGATTGGTCCGCCAGATTAATTTGATGGAGGAGGATTGCACCCTTGGTTCTAAACCTGGACTAGGTGCAGTTATGACTTGGACTCTTGGATTAGGACTTTCATGCTTACTTGGCTTAGTAATTGGAATTGTGGTGCGTCCTTACATCATCCCTAATAAAGGCACCAACCCTTGCCACTTCACCGAGACATGGAAGCGTTACCTAACCAGTCTGGGGAAGCTAGCACAGACGCTCTTCTTCGGCGCCAAAAGCGCAATTGCTAGCTGCAGTTGCTCCTCTGTTTACAAAATCCTGATGAGCTTTTGGAGATTGAGTCTCTCTCATCTTGTTTGCATGTCTAGAATTAGAATCAACATAGTTTCTCCAAGGCCACATCTGGAATCAGTGTCTTTGCTAGATTTAGATGCCTGCAATAGCGGTGAGGTAACAAAGTCAGGTAAGTATTATGACCAATTGAAGGATTTGATGAGTTTTGATGAAGATTCAAACAATGGCAAGGCAACCTTTAACAAAGGAAATGATAGCATAGGAAGGAGGAATGTGTGCTATGAAGGTGATGTCATGATGAAGGCTAACATGGGCTTTGTAGAGACACCTAAAGATAACAATAACATTGTTCGTCAAGAATCTTCTGTGTGTAAAATGGGTATTGTGAAGCGTAGATGA >Glyma08g39920.2 sequence type=CDS gene model=Glyma08g39920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCACTTTCCACCTTCCTCACACTCACTCTCTTCTTCCTCTCACACGTTAACGCCAAAGAAATCGTCATCACCGAAGAGGGTTACACCGTGACCACCGTATTCGACGGCCACAAGCCTCACATCTTCCCTTTCACCGTTCTCCAGCGACCCTTTTCCTCCGATCTCATCCTTCTCGATTCCGTCAACAGCACTTTCTACACGGCGCAATTCCCCATTACTGAAGAAAGCGTTTTCACGAGGCTTTCTGGCGATGGGTCTGTGGGGTATTCTGATGGGGACGTGGGTTCTGCTCGGTTCGCCAAACCCAGAAGCTTTGCTTTTGATATGAGAGGGAATGTGTATGTTGCTGATAAGTCCAACCGTGCAATAAGGAAAATTAGTGCCAAGGGTGTGACCACGATTGCTGGGGGAGAGTTCTCAGAAAAGTCAAGAACAAAGGATGGGCCTGCACTTAATGCATCATTTTCAAATGATTTTGACCTGACTTTCATTCCTGGGCTGTGTGCTTTGCTCGTGTCAGATCACATGCATAGATTGGTCCGCCAGATTAATTTGATGGAGGAGGATTGCACCCTTGGTTCTAAACCTGGACTAGGTGCAGTTATGACTTGGACTCTTGGATTAGGACTTTCATGCTTACTTGGCTTAGTAATTGGAATTGTGAAAGGCACCAACCCTTGCCACTTCACCGAGACATGGAAGCGTTACCTAACCAGTCTGGGGAAGCTAGCACAGACGCTCTTCTTCGGCGCCAAAAGCGCAATTGCTAGCTGCAGTTGCTCCTCTGTTTACAAAATCCTGATGAGCTTTTGGAGATTGAGTCTCTCTCATCTTGTTTGCATGTCTAGAATTAGAATCAACATAGTTTCTCCAAGGCCACATCTGGAATCAGTGTCTTTGCTAGATTTAGATGCCTGCAATAGCGGTGAGGTAACAAAGTCAGGTAAGTATTATGACCAATTGAAGGATTTGATGAGTTTTGATGAAGATTCAAACAATGGCAAGGCAACCTTTAACAAAGGAAATGATAGCATAGGAAGGAGGAATGTGTGCTATGAAGGTGATGTCATGATGAAGGCTAACATGGGCTTTGTAGAGACACCTAAAGATAACAATAACATTGTTCGTCAAGAATCTTCTGTGTGTAAAATGGGTATTGTGAAGCGTAGATGA
>Glyma08g39920.1 sequence type=predicted peptide gene model=Glyma08g39920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASLSTFLTLTLFFLSHVNAKEIVITEEGYTVTTVFDGHKPHIFPFTVLQRPFSSDLILLDSVNSTFYTAQFPITEESVFTRLSGDGSVGYSDGDVGSARFAKPRSFAFDMRGNVYVADKSNRAIRKISAKGVTTIAGGEFSEKSRTKDGPALNASFSNDFDLTFIPGLCALLVSDHMHRLVRQINLMEEDCTLGSKPGLGAVMTWTLGLGLSCLLGLVIGIVVRPYIIPNKGTNPCHFTETWKRYLTSLGKLAQTLFFGAKSAIASCSCSSVYKILMSFWRLSLSHLVCMSRIRINIVSPRPHLESVSLLDLDACNSGEVTKSGKYYDQLKDLMSFDEDSNNGKATFNKGNDSIGRRNVCYEGDVMMKANMGFVETPKDNNNIVRQESSVCKMGIVKRR* >Glyma08g39920.2 sequence type=predicted peptide gene model=Glyma08g39920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASLSTFLTLTLFFLSHVNAKEIVITEEGYTVTTVFDGHKPHIFPFTVLQRPFSSDLILLDSVNSTFYTAQFPITEESVFTRLSGDGSVGYSDGDVGSARFAKPRSFAFDMRGNVYVADKSNRAIRKISAKGVTTIAGGEFSEKSRTKDGPALNASFSNDFDLTFIPGLCALLVSDHMHRLVRQINLMEEDCTLGSKPGLGAVMTWTLGLGLSCLLGLVIGIVKGTNPCHFTETWKRYLTSLGKLAQTLFFGAKSAIASCSCSSVYKILMSFWRLSLSHLVCMSRIRINIVSPRPHLESVSLLDLDACNSGEVTKSGKYYDQLKDLMSFDEDSNNGKATFNKGNDSIGRRNVCYEGDVMMKANMGFVETPKDNNNIVRQESSVCKMGIVKRR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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