Glyma08g39910 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g39910

Feature Type:	gene_model
Chromosome:	Gm08
Start:	39507419
stop:	39510953
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g39910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G70280	AT	Annotation by Michelle Graham. TAIR10: NHL domain-containing protein \| chr1:26466086-26468116 REVERSE LENGTH=447	SoyBase	E_val: 5.00E-141	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR13833	Panther	ZINC FINGER PROTEIN TRANSCRIPTION FACTOR	JGI		ISS
PTHR13833:SF16	Panther	NHL REPEAT-CONTAINING PROTEIN	JGI		ISS
PF01436	PFAM	NHL repeat	JGI		ISS
UniRef100_F4I5D7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NHL domain-containing protein n=2 Tax=Arabidopsis thaliana RepID=F4I5D7_ARATH	SoyBase	E_val: 2.00E-137	ISS
UniRef100_I1KXI4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXI4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g39910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g39910

Paralog	Evidence	Comments
Glyma18g18550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g39910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g288800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g39910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g39910

Limit To All Plant Sequences

>Glyma08g39910.2   sequence type=CDS   gene model=Glyma08g39910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAAGCTTGGGATCGAGCCTTATGCTGTGGAGGTGTTGCCCAATGGGGAGCTTCTCATTCTTGATTCGGCTAATAGTAACATTTATAGGATTTCATCCTCGCTTTCTTTGTACAGCCGACCCAAGCTGGTTGCAGGATCAGCTGAAGGGTATTCTGGACATGTTTGATGGAAAACTCAGGGAGGCTAGGATGAGTCACCCAAAGGGGATAACTGTTGATGACCGAGGAAATATTTATGTTGCAGATACTACGAATATGGCAATTAGGAAAATTAGTGATTCAGGGGTCACGACAATTGCTGGTGGAAAATGGAGCCGCGGAGGGGGCCATGTTGATGGACCAAGTGAAGAAGCTAAATTTTCTGGTGACTTTGATGTGGCTTATGTTGGAAGTAGCTGTTCGCTACTCGTCATAGACAGAGGAAACCGAGCCATCAGGGAGATCCAACTCCATTTTGATGATTGTGCTTATCAATATGGCAGTGGATTCCCACTTGGGATTGCAATGCTTGTTGGGGCTGGATTCTTTGGTTACATGCTGGCATTACTGCAGCGTAGGCTTGGTACAATTGTGTCATCCCAGGAAGCTCAGGTTCCAGTAACAGTAACATCTTCGGTTCCTCCAAGTCCATATCAAAAGCCCTTTAAATCTGTCAGGCCTCCTTTAATTCCAGCAGAATGTGAACCTGACAAGCAGGAAGAAGGTTTCTTCGGATCCCTTGGGAAGCTTATTGCCAACACCGGTGTGTCAATGGTGGAGATAATGGGAGGACTATTTCCTTCTTTCAGAAGAAAATCCCTGAGCTACCAATTTCAACGACAACCACTTATCCAGCAACCTCAGAAGCAAGTTAATGCTTGGCCGGTGCAGGAAAGCTTTGTGATCCCCGACGAAGACCAGCCCCCTTCCATCGACACAAGGGCCCCAACCCCACGAAAAACCTATCCTTTCATGTCCAAGGATGCAGAGAAAATGCAACAACTGCGACAAAGCCGAGCATTCTACAGCGGATGGGATGGAGATCTCCAGCAGCAACAGCAACAGAAACACCATCATCGCCATCAGTACCGCTCGTCAATCCCTCACACTTACTATGAGCAGAGCCATGAGACAACCAATGAAATAGTATTTGGGGCAGTGCAGGAGCAGGATAGGAAGCAGGAATCTGTGGTTATCAAGCCTGTGGATTATGGGGAATCAATGTATGAACAAAATATTCGGTCTAGAATGAGTTCCATGGGTTATGGTTACAGGTATTGA

Predicted protein sequences of Glyma08g39910

Limit To All Plant Sequences

>Glyma08g39910.2   sequence type=predicted peptide   gene model=Glyma08g39910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEASLGSSLMLWRCCPMGSFSFLIRLIVTFIGFHPRFLCTADPSWLQDQLKGILDMFDGKLREARMSHPKGITVDDRGNIYVADTTNMAIRKISDSGVTTIAGGKWSRGGGHVDGPSEEAKFSGDFDVAYVGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSGFPLGIAMLVGAGFFGYMLALLQRRLGTIVSSQEAQVPVTVTSSVPPSPYQKPFKSVRPPLIPAECEPDKQEEGFFGSLGKLIANTGVSMVEIMGGLFPSFRRKSLSYQFQRQPLIQQPQKQVNAWPVQESFVIPDEDQPPSIDTRAPTPRKTYPFMSKDAEKMQQLRQSRAFYSGWDGDLQQQQQQKHHHRHQYRSSIPHTYYEQSHETTNEIVFGAVQEQDRKQESVVIKPVDYGESMYEQNIRSRMSSMGYGYRY*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain