SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G12790 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:7517280-7518892 REVERSE LENGTH=271 | SoyBase | E_val: 7.00E-154 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG1534 | KOG | Putative transcription factor FET5 | JGI | ISS | |
| PTHR21231 | Panther | XPA-BINDING PROTEIN 1-RELATED | JGI | ISS | |
| PTHR21231:SF4 | Panther | PRYA1876 | JGI | ISS | |
| PF03029 | PFAM | Conserved hypothetical ATP binding protein | JGI | ISS | |
| UniRef100_G7J6P4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GPN-loop GTPase-like protein n=1 Tax=Medicago truncatula RepID=G7J6P4_MEDTR | SoyBase | E_val: 5.00E-176 | ISS |
| UniRef100_I1KXI3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXI3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g39880 not represented in the dataset |
Glyma08g39880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g288700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g39880.4 sequence type=transcript gene model=Glyma08g39880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAAAATGGAGTCAAACCTTTACCCAACAACTTAATTTATTTTGTAACGCCAAACGTCCATCCAAAATTGCGTTCCTAAATCGCCGCTACCGAACACAGCCGTAGACTTTTAATTCATTCCGCTGCGTTTCTTTCTCTGCACTTCAAAGTTCAAACCCTAGCGAAGCATCCACTGTCGCCGTCGCACACTCGCACGCCGCTCACAGGTTTATGGGCTACGCTGATGTCCTGAATTTGTTGTTGGCCGTGGTGGTTTGGTGCACTGCTTACGTTACTGTTGTAGTTCTCGCTTCCTTTCGAGCCGTTTGCACTTTCTGAAACCTTGCAATTTCATTGATAACATGGGTTATGCACAGCTTGTCATAGGTCCTGCTGGTAGTGGCAAGTCCACGTATTGCTCAAGTTTGTATGAACACTGTGTTGCTGCACGGCGATCGATACATGTTGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGGATATAAGGGAACTCATTTCCCTAGATGATGTTATGGAGGAACTTGGATTGGGTCCTAATGGTGGTCTTGTCTACTGCATGGAACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACAATTATTTAGATGATGATTACTTGGTTTTCGACTGCCCTGGTCAGATAGAACTATATTCACATGTCCCAGTGCTTAAGAATTTTGTGGAACATTTGAAACGGAAAAATTTTAGTGTTTGTGCTGTTTACTTACTTGATTCACAGTTCATGACAGACGTGACCAAGTTTATAAGTGGATGCATGGCATGTCTTTCTGCGATGGTTCAACTTGAACTACCTCATGTTAATATCCTCTCAAAGATGGACCTTGTGACTAAAAAGAAGGATCTTGAAGATTTTTTGGATCCAGAGCCCACCTTTTTATTGTCTGAATTGAATCAACGGATGGGTCCTCAGTATGCAAAGCTGAATAAGGCTTTGATTGAATTGGTAAATAACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAGTATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGATGCAGATGTGAAGGTTAAGGATTTTGACCCTGAGGATGATGAGTAGCCAATCCCCTTCTGCAACACTGCTTGGTATAATTGAAAGTTCTGCTTAACTTCGACATTATGGTGTACCAAGCTGAAGTTGTTAATATGTAGTATCTCATTAGATTGTTTTAATGTGAATTGAGGAAGTTGAACATTTATACAGTTTATCCTCTAAATGGGATGAAAAATTGGCTAGCTTGATCATTCTCTTGCCATTACTGCTTCCTTTCTGGGAATTTTATGACTTTGGTCGCAAGAGTAAAAATCTGATGGCAAAGTAGACAATGCAAGAATGAGAAGGATGAATTTGTATGATGAAAATATTGACTGAGCCTGTTTGAATACAAGGCTAGCTGAGTTTTTGTGAGCATGACACTAAAAGGTAAACGTATTTGTCACGTACAGGAAAGAACTAGTGAACTGGGATTAGCTGTAGTTTTACTATATACAACAGAGAATTTAATTTACGTTGTATTTTAAAGTATTATTTTACTAAAATTAAAGCATAACTTTTTTTTT
>Glyma08g39880.3 sequence type=CDS gene model=Glyma08g39880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTATGCACAGCTTGTCATAGGTCCTGCTGGTAGTGGCAAGTCCACGTATTGCTCAAGTTTGTATGAACACTGTGTTGCTGCACGGCGATCGATACATGTTGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGGATATAAGGGAACTCATTTCCCTAGATGATGTTATGGAGGAACTTGGATTGGGTCCTAATGGTGGTCTTGTCTACTGCATGGAACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACAATTATTTAGATGATGATTACTTGGTTTTCGACTGCCCTGGTCAGATAGAACTATATTCACATGTCCCAGTGCTTAAGAATTTTGTGGAACATTTGAAACGGAAAAATTTTAGTGTTTGTGCTGTTTACTTACTTGATTCACAGTTCATGACAGACGTGACCAAGTTTATAAGTGGATGCATGGCATGTCTTTCTGCGATGGTTCAACTTGAACTACCTCATGTTAATATCCTCTCAAAGATGGACCTTGTGACTAAAAAGAAGGATCTTGAAGATTTTTTGGATCCAGAGCCCACCTTTTTATTGTCTGAATTGAATCAACGGATGGGTCCTCAGTATGCAAAGCTGAATAAGGCTTTGATTGAATTGGTAAATAACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAGTATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGATGCAGATGTGAAGGTTAAGGATTTTGACCCTGAGGATGATGAGTAG >Glyma08g39880.4 sequence type=CDS gene model=Glyma08g39880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTATGCACAGCTTGTCATAGGTCCTGCTGGTAGTGGCAAGTCCACGTATTGCTCAAGTTTGTATGAACACTGTGTTGCTGCACGGCGATCGATACATGTTGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGGATATAAGGGAACTCATTTCCCTAGATGATGTTATGGAGGAACTTGGATTGGGTCCTAATGGTGGTCTTGTCTACTGCATGGAACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACAATTATTTAGATGATGATTACTTGGTTTTCGACTGCCCTGGTCAGATAGAACTATATTCACATGTCCCAGTGCTTAAGAATTTTGTGGAACATTTGAAACGGAAAAATTTTAGTGTTTGTGCTGTTTACTTACTTGATTCACAGTTCATGACAGACGTGACCAAGTTTATAAGTGGATGCATGGCATGTCTTTCTGCGATGGTTCAACTTGAACTACCTCATGTTAATATCCTCTCAAAGATGGACCTTGTGACTAAAAAGAAGGATCTTGAAGATTTTTTGGATCCAGAGCCCACCTTTTTATTGTCTGAATTGAATCAACGGATGGGTCCTCAGTATGCAAAGCTGAATAAGGCTTTGATTGAATTGGTAAATAACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAGTATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGATGCAGATGTGAAGGTTAAGGATTTTGACCCTGAGGATGATGAGTAG
>Glyma08g39880.3 sequence type=predicted peptide gene model=Glyma08g39880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGYAQLVIGPAGSGKSTYCSSLYEHCVAARRSIHVVNLDPAAENFDYPVAMDIRELISLDDVMEELGLGPNGGLVYCMEHLEDNLDDWLTEELDNYLDDDYLVFDCPGQIELYSHVPVLKNFVEHLKRKNFSVCAVYLLDSQFMTDVTKFISGCMACLSAMVQLELPHVNILSKMDLVTKKKDLEDFLDPEPTFLLSELNQRMGPQYAKLNKALIELVNNYSMVSFIPLDLRKEKSIQYVLAQIDNCIQYGEDADVKVKDFDPEDDE* >Glyma08g39880.4 sequence type=predicted peptide gene model=Glyma08g39880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGYAQLVIGPAGSGKSTYCSSLYEHCVAARRSIHVVNLDPAAENFDYPVAMDIRELISLDDVMEELGLGPNGGLVYCMEHLEDNLDDWLTEELDNYLDDDYLVFDCPGQIELYSHVPVLKNFVEHLKRKNFSVCAVYLLDSQFMTDVTKFISGCMACLSAMVQLELPHVNILSKMDLVTKKKDLEDFLDPEPTFLLSELNQRMGPQYAKLNKALIELVNNYSMVSFIPLDLRKEKSIQYVLAQIDNCIQYGEDADVKVKDFDPEDDE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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