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Report for Sequence Feature Glyma08g39830

Feature Type:gene_model
Chromosome:Gm08
Start:39410569
stop:39414124
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G23860AT Annotation by Michelle Graham. TAIR10: RS-containing zinc finger protein 21 | chr1:8428091-8429164 REVERSE LENGTH=187 SoyBaseE_val: 2.00E-49ISS
GO:0000398GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006396GO-bp Annotation by Michelle Graham. GO Biological Process: RNA processing SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0030422GO-bp Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0043687GO-bp Annotation by Michelle Graham. GO Biological Process: post-translational protein modification SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016607GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear speck SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG0107 KOG Alternative splicing factor SRp20/9G8 (RRM superfamily) JGI ISS
PTHR10548Panther ARGININE/SERINE-RICH SPLICING FACTOR JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
PF00098PFAM Zinc knuckle JGI ISS
UniRef100_B9T7V5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9T7V5_RICCO SoyBaseE_val: 9.00E-64ISS
UniRef100_I1KXH3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXH3_SOYBN SoyBaseE_val: 8.00E-126ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g39830 not represented in the dataset

Glyma08g39830 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma18g18860 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g288300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g39830.5   sequence type=transcript   gene model=Glyma08g39830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTTTTTTATAAATTTTAAATACTAAAATATTATATTTGAATTTTACATGTATCAATTTGTGAGTATCTTTTTAGACGAATCACTAATTACTCTTATAAAAATTAGAATTTTTAGGATTTAAGAACTCTTCAATTTCCCTTCCGATCATCCCGAATCCTCGAGATTTCTTTCGATTGAACTCATTTCTCTCTTCTTCGCCACGCACTCTTGTCTCTGTAAGCGGTGATTTTGGTTCTGGACAATGTCTCGTGTTTATGTTGGGAATTTAGACCCTCGAGTCAGTGAGAGGGACCTCGAAGATGAATTTCGTATATATGGTGTTCTTAGGAGTGTCTGGGTTGCTCGAAGACCACCGGGATATGCATTTATTGAGTTTGATGATAGGAGGGATGCACTTGATGCAATTCAGGCCTTGGATGGAAAAAATGGTTGGCGTGTAGAGCTTTCTCATAATTCCAAGGGTGGTGGCCGAGGAGGGCGTGGGCGTGGAGGTGAAGACACAAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGGGAGTGCCGATTGCGCATTGGATCACGTGGCCTTGGAAGTGGAAGGAGGCGAAGTCCAAGTCCTTATCGGCGTCGTAGAAGTCCGAGTTATGGTTATGATCGCAGTAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACCTCCCTGGGGTCGCAACTACAGCAGGTCCCCTCCATATCGTCCTCGCCGTGATTCACCTTATGCCAATGCAGATTAAAATCAGAATGTGAACGGAGCAAGTGCTGAATAGTTGTTAGGATGTTCTCTCTGCTATAGTGTAGTTCCTCTAGGATTGGTTGAGCATACCACAGACATGTTAGTTATGTTGATGTCATGACAATGGGTATTGTTAAGAACTTGGCTTTTGATGGAACTACATAGGGTTGTAGCTGGCAAAAGGGTGCGTTGGACACTGTTTTGCATTGGCTGTCTCTCTTCAGCTTACTGAAACCTGAAGGTTGCTTCAGTCTTCCCTACTTTATATAGCATGTTATGTTAATTGTTTGTTTTTAGTCTTACTAATCCACTATGGTAATTTTGATATATTTTTGCATTAAAGGTGCCTAAAATGTTCACGTTTCTTTGTTTTGAGGTGTGATTACCGGCCAAAACAGCACCATTTTGCCACTTACTACGTCTTGCCTGCTTCTCTGCTTCATGCCCCCTCAATCGTCTCATCTTGTTTCTGCATCTAAGTTGACTAAAAGTTCAATGTCAACAAGTTGGTTGTGTATGACCTTTTTGCTTACTGTTCAGGAAAGGAATGCTACATATGCATCCCCCTTAGGATTTGGAGGAGTCTAAAGGTGGATGATAGAATGTAGTCATTGGCTTGCTGTATCTTCATGAAATTAAGATAAATTAGGAATTATTTAGCGAGTAACTGCATATAGTGTCTGCTTCACACCATTCTATATGGTCATATTGATGGTTGCTGCTTCTAATTGTCTGCATCTTGATTAGAATGTTACTTGTTTCATCCGTGGTCTCTGATATATGCTTGCCGTTTGGGAGCAATGGTCATCATCTTGGTTGTGTAGGACACTGTATTGTGTATCCTCCTTCGGCAAATCACCTGTTGATCTATGATCTCTAAGGACTGGGACTAGAAAGAGTGATTCCATTTAACCAAATGAGTACTTGCCAAATGTCTTTCATTCTCCACTTGCTGCTCTGCTCTTTGTGATCTGTGTCCACAGCTTTCTCATTTGACTGATTAACTTTTGCATGCTTCTGTATGGAATTTTGTGTCATCTTCAGCTACTGGGATCTGTCACTTTGTCTCCCATCTGCAGTTTTGTTTTGCTAAATATCGTCCGCTCCTAATCAAGTGTATTAACTCCGGTTGATTGGAAGCATTGATTGCATTAAGATGTTTGAATTTGAGGAATTCGTTGCTTCTTGTCCTTGTCTTAGAATGTGAGTTTAGTGTTGCCACTTGCGTATAGCTCCATTAAGATTAGTTGATTTTGATCTGGTTAATTATGTTTTAAGTATTAAGTACCTTTTTTGTAAAAAAAAAGTATTGACTTGTCATGAACTAAATGCGAATACTAAAATGTGTGTGTGTATATATATATATATATATATATATATA

>Glyma08g39830.6   sequence type=transcript   gene model=Glyma08g39830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAACTCTTCAATTTCCCTTCCGATCATCCCGAATCCTCGAGATTTCTTTCGATTGAACTCATTTCTCTCTTCTTCGCCACGCACTCTTGTCTCTGTAAGCGTAAGGATTCAGAGCTATTCATTCCTCCAAATCTCTTTTTCATCCATACTATTTTTTTTTTAATTTAAATCTCAAGAGGGTGATTTTGGTTCTGGACAATGTCTCGTGTTTATGTTGGGAATTTAGACCCTCGAGTCAGTGAGAGGGACCTCGAAGATGAATTTCGTATATATGGTGTTCTTAGGAGTGTCTGGGTTGCTCGAAGACCACCGGGATATGCATTTATTGAGTTTGATGATAGGAGGGATGCACTTGATGCAATTCAGGCCTTGGATGGAAAAAATGGTTGGCGTGTAGAGCTTTCTCATAATTCCAAGGGTGGTGGCCGAGGAGGGCGTGGGCGTGGAGGTGAAGACACAAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGGGAGTGCCGATTGCGCATTGGATCACGTGGCCTTGGAAGTGGAAGGAGGCGAAGTCCAAGTCCTTATCGGCGTCGTAGAAGTCCGAGTTATGGTTATGATCGCAGTAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACCTCCCTGGGGTCGCAACTACAGCAGGTCCCCTCCATATCGTCCTCGCCGTGATTCACCTTATGCCAATGCAGATTAAAATCAGAATGTGAACGGAGCAAGTGCTGAATAGTTGTTAGGATGTTCTCTCTGCTATAGTGTAGTTCCTCTAGGATTGGTTGAGCATACCACAGACATGTTAGTTATGTTGATGTCATGACAATGGGTATTGTTAAGAACTTGGCTTTTGATGGAACTACATAGGGTTGTAGCTGGCAAAAGGGTGCGTTGGACACTGTTTTGCATTGGCTGTCTCTCTTCAGCTTACTGAAACCTGAAGGTTGCTTCAGTCTTCCCTACTTTATATAGCATGTTATGTTAATTGTTTGTTTTTAGTCTTACTAATCCACTATGGTAATTTTGATATATTTTTGCATTAAAGGTGCCTAAAATGTTCACGTTTCTTTGTTTTGAGGTGTGATTACCGGCCAAAACAGCACCATTTTGCCACTTACTACGTCTTGCCTGCTTCTCTGCTTCATGCCCCCTCAATCGTCTCATCTTGTTTCTGCATCTAAGTTGACTAAAAGTTCAATGTCAACAAGTTGGTTGTGTATGACCTTTTTGCTTACTGTTCAGGAAAGGAATGCTACATATGCATCCCCCTTAGGATTTGGAGGAGTCTAAAGGTGGATGATAGAATGTAGTCATTGGCTTGCTGTATCTTCATGAAATTAAGATAAATTAGGAATTATTTAGCGAGTAACTGCATATAGTGTCTGCTTCACACCATTCTATATGGTCATATTGATGGTTGCTGCTTCTAATTGTCTGCATCTTGATTAGAATGTTACTTGTTTCATCCGTGGTCTCTGATATATGCTTGCCGTTTGGGAGCAATGGTCATCATCTTGGTTGTGTAGGACACTGTATTGTGTATCCTCCTTCGGCAAATCACCTGTTGATCTATGATCTCTAAGGACTGGGACTAGAAAGAGTGATTCCATTTAACCAAATGAGTACTTGCCAAATGTCTTTCATTCTCCACTTGCTGCTCTGCTCTTTGTGATCTGTGTCCACAGCTTTCTCATTTGACTGATTAACTTTTGCATGCTTCTGTATGGAATTTTGTGTCATCTTCAGCTACTGGGATCTGTCACTTTGTCTCCCATCTGCAGTTTTGTTTTGCTAAATATCGTCCGCTCCTAATCAAGTGTATTAACTCCGGTTGATTGGAAGCATTGATTGCATTAAGATGTTTGAATTTGAGGAATTCGTTGCTTCTTGTCCTTGTCTTAGAATGTGAGTTTAGTGTTGCCACTTGCGTATAGCTCCATTAAGATTAGTTGATTTTGATCTGGTTAATTATGTTTTAAGTATTAAGTACCTTTTTTGTAAAAAAAAAGTATTGACTTGTCATG

>Glyma08g39830.1   sequence type=CDS   gene model=Glyma08g39830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCGTGTTTATGTTGGGAATTTAGACCCTCGAGTCAGTGAGAGGGACCTCGAAGATGAATTTCGTATATATGGTGTTCTTAGGAGTGTCTGGGTTGCTCGAAGACCACCGGGATATGCATTTATTGAGTTTGATGATAGGAGGGATGCACTTGATGCAATTCAGGCCTTGGATGGAAAAAATGGTTGGCGTGTAGAGCTTTCTCATAATTCCAAGGGTGGTGGCCGAGGAGGGCGTGGGCGTGGAGGTGAAGACACAAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGGGAGTGCCGATTGCGCATTGGATCACGTGGCCTTGGAAGTGGAAGGAGGCGAAGTCCAAGTCCTTATCGGCGTCGTAGAAGTCCGAGTTATGGTTATGATCGCAGTAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACCTCCCTGGGGTCGCAACTACAGCAGGTCCCCTCCATATCGTCCTCGCCGTGATTCACCTTATGCCAATGCGTATGTTTATGTTCAACTCAGTTGTTCTTTACTCTGA

>Glyma08g39830.5   sequence type=CDS   gene model=Glyma08g39830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCGTGTTTATGTTGGGAATTTAGACCCTCGAGTCAGTGAGAGGGACCTCGAAGATGAATTTCGTATATATGGTGTTCTTAGGAGTGTCTGGGTTGCTCGAAGACCACCGGGATATGCATTTATTGAGTTTGATGATAGGAGGGATGCACTTGATGCAATTCAGGCCTTGGATGGAAAAAATGGTTGGCGTGTAGAGCTTTCTCATAATTCCAAGGGTGGTGGCCGAGGAGGGCGTGGGCGTGGAGGTGAAGACACAAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGGGAGTGCCGATTGCGCATTGGATCACGTGGCCTTGGAAGTGGAAGGAGGCGAAGTCCAAGTCCTTATCGGCGTCGTAGAAGTCCGAGTTATGGTTATGATCGCAGTAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACCTCCCTGGGGTCGCAACTACAGCAGGTCCCCTCCATATCGTCCTCGCCGTGATTCACCTTATGCCAATGCAGATTAA

>Glyma08g39830.6   sequence type=CDS   gene model=Glyma08g39830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCGTGTTTATGTTGGGAATTTAGACCCTCGAGTCAGTGAGAGGGACCTCGAAGATGAATTTCGTATATATGGTGTTCTTAGGAGTGTCTGGGTTGCTCGAAGACCACCGGGATATGCATTTATTGAGTTTGATGATAGGAGGGATGCACTTGATGCAATTCAGGCCTTGGATGGAAAAAATGGTTGGCGTGTAGAGCTTTCTCATAATTCCAAGGGTGGTGGCCGAGGAGGGCGTGGGCGTGGAGGTGAAGACACAAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGGGAGTGCCGATTGCGCATTGGATCACGTGGCCTTGGAAGTGGAAGGAGGCGAAGTCCAAGTCCTTATCGGCGTCGTAGAAGTCCGAGTTATGGTTATGATCGCAGTAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACCTCCCTGGGGTCGCAACTACAGCAGGTCCCCTCCATATCGTCCTCGCCGTGATTCACCTTATGCCAATGCAGATTAA

>Glyma08g39830.1   sequence type=predicted peptide   gene model=Glyma08g39830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRVYVGNLDPRVSERDLEDEFRIYGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGRGGRGRGGEDTKCYECGEPGHFARECRLRIGSRGLGSGRRRSPSPYRRRRSPSYGYDRSSYSPRGRRSPRRRSISPPWGRNYSRSPPYRPRRDSPYANAYVYVQLSCSLL*

>Glyma08g39830.5   sequence type=predicted peptide   gene model=Glyma08g39830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRVYVGNLDPRVSERDLEDEFRIYGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGRGGRGRGGEDTKCYECGEPGHFARECRLRIGSRGLGSGRRRSPSPYRRRRSPSYGYDRSSYSPRGRRSPRRRSISPPWGRNYSRSPPYRPRRDSPYANAD*

>Glyma08g39830.6   sequence type=predicted peptide   gene model=Glyma08g39830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRVYVGNLDPRVSERDLEDEFRIYGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGRGGRGRGGEDTKCYECGEPGHFARECRLRIGSRGLGSGRRRSPSPYRRRRSPSYGYDRSSYSPRGRRSPRRRSISPPWGRNYSRSPPYRPRRDSPYANAD*







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