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Report for Sequence Feature Glyma08g39830
Feature Type: gene_model
Chromosome: Gm08
Start: 39410569
stop: 39414124
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g39830
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G23860 AT
Annotation by Michelle Graham. TAIR10: RS-containing zinc finger protein 21 | chr1:8428091-8429164 REVERSE LENGTH=187
SoyBase E_val: 2.00E-49 ISS
GO:0000398 GO-bp
Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome
SoyBase N/A ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0006396 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA processing
SoyBase N/A ISS
GO:0022402 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell cycle process
SoyBase N/A ISS
GO:0030422 GO-bp
Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference
SoyBase N/A ISS
GO:0035196 GO-bp
Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA
SoyBase N/A ISS
GO:0043687 GO-bp
Annotation by Michelle Graham. GO Biological Process: post-translational protein modification
SoyBase N/A ISS
GO:0045893 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0048573 GO-bp
Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0016607 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nuclear speck
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
KOG0107
KOG
Alternative splicing factor SRp20/9G8 (RRM superfamily)
JGI ISS
PTHR10548 Panther
ARGININE/SERINE-RICH SPLICING FACTOR
JGI ISS
PF00076 PFAM
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
JGI ISS
PF00098 PFAM
Zinc knuckle
JGI ISS
UniRef100_B9T7V5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9T7V5_RICCO
SoyBase E_val: 9.00E-64 ISS
UniRef100_I1KXH3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXH3_SOYBN
SoyBase E_val: 8.00E-126 ISS
Expression Patterns of Glyma08g39830
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g39830
Paralog Evidence Comments
Glyma18g18860 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g39830 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g288300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g39830
Transcripts of Glyma08g39830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g39830.5 sequence type=transcript gene model=Glyma08g39830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CCTTTTTTATAAATTTTAAATACTAAAATATTATATTTGAATTTTACATGTATCAATTTGTGAGTATCTTTTTAGACGAATCACTAATTACTCTTATAAAAATTAGAATTTTTAGGATTTAAGAACTCTTCAATTTCCCTTCCGATCATCCCGAATCCTCGAGATTTCTTTCGATTGAACTCATTTCTCTCTTCTTCGCCACGCACTCTTGTCTCTGTAAGCGGTGATTTTGGTTCTGGACAATGTCTCGTGTTTATGTTGGGAATTTAGACCCTCGAGTCAGTGAGAGGGACCTCGAAGATGAATTTCGTATATATGGTGTTCTTAGGAGTGTCTGGGTTGCTCGAAGACCACCGGGATATGCATTTATTGAGTTTGATGATAGGAGGGATGCACTTGATGCAATTCAGGCCTTGGATGGAAAAAATGGTTGGCGTGTAGAGCTTTCTCATAATTCCAAGGGTGGTGGCCGAGGAGGGCGTGGGCGTGGAGGTGAAGACACAAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGGGAGTGCCGATTGCGCATTGGATCACGTGGCCTTGGAAGTGGAAGGAGGCGAAGTCCAAGTCCTTATCGGCGTCGTAGAAGTCCGAGTTATGGTTATGATCGCAGTAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACCTCCCTGGGGTCGCAACTACAGCAGGTCCCCTCCATATCGTCCTCGCCGTGATTCACCTTATGCCAATGCAGATTAAAATCAGAATGTGAACGGAGCAAGTGCTGAATAGTTGTTAGGATGTTCTCTCTGCTATAGTGTAGTTCCTCTAGGATTGGTTGAGCATACCACAGACATGTTAGTTATGTTGATGTCATGACAATGGGTATTGTTAAGAACTTGGCTTTTGATGGAACTACATAGGGTTGTAGCTGGCAAAAGGGTGCGTTGGACACTGTTTTGCATTGGCTGTCTCTCTTCAGCTTACTGAAACCTGAAGGTTGCTTCAGTCTTCCCTACTTTATATAGCATGTTATGTTAATTGTTTGTTTTTAGTCTTACTAATCCACTATGGTAATTTTGATATATTTTTGCATTAAAGGTGCCTAAAATGTTCACGTTTCTTTGTTTTGAGGTGTGATTACCGGCCAAAACAGCACCATTTTGCCACTTACTACGTCTTGCCTGCTTCTCTGCTTCATGCCCCCTCAATCGTCTCATCTTGTTTCTGCATCTAAGTTGACTAAAAGTTCAATGTCAACAAGTTGGTTGTGTATGACCTTTTTGCTTACTGTTCAGGAAAGGAATGCTACATATGCATCCCCCTTAGGATTTGGAGGAGTCTAAAGGTGGATGATAGAATGTAGTCATTGGCTTGCTGTATCTTCATGAAATTAAGATAAATTAGGAATTATTTAGCGAGTAACTGCATATAGTGTCTGCTTCACACCATTCTATATGGTCATATTGATGGTTGCTGCTTCTAATTGTCTGCATCTTGATTAGAATGTTACTTGTTTCATCCGTGGTCTCTGATATATGCTTGCCGTTTGGGAGCAATGGTCATCATCTTGGTTGTGTAGGACACTGTATTGTGTATCCTCCTTCGGCAAATCACCTGTTGATCTATGATCTCTAAGGACTGGGACTAGAAAGAGTGATTCCATTTAACCAAATGAGTACTTGCCAAATGTCTTTCATTCTCCACTTGCTGCTCTGCTCTTTGTGATCTGTGTCCACAGCTTTCTCATTTGACTGATTAACTTTTGCATGCTTCTGTATGGAATTTTGTGTCATCTTCAGCTACTGGGATCTGTCACTTTGTCTCCCATCTGCAGTTTTGTTTTGCTAAATATCGTCCGCTCCTAATCAAGTGTATTAACTCCGGTTGATTGGAAGCATTGATTGCATTAAGATGTTTGAATTTGAGGAATTCGTTGCTTCTTGTCCTTGTCTTAGAATGTGAGTTTAGTGTTGCCACTTGCGTATAGCTCCATTAAGATTAGTTGATTTTGATCTGGTTAATTATGTTTTAAGTATTAAGTACCTTTTTTGTAAAAAAAAAGTATTGACTTGTCATGAACTAAATGCGAATACTAAAATGTGTGTGTGTATATATATATATATATATATATATATA
>Glyma08g39830.6 sequence type=transcript gene model=Glyma08g39830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GAACTCTTCAATTTCCCTTCCGATCATCCCGAATCCTCGAGATTTCTTTCGATTGAACTCATTTCTCTCTTCTTCGCCACGCACTCTTGTCTCTGTAAGCGTAAGGATTCAGAGCTATTCATTCCTCCAAATCTCTTTTTCATCCATACTATTTTTTTTTTAATTTAAATCTCAAGAGGGTGATTTTGGTTCTGGACAATGTCTCGTGTTTATGTTGGGAATTTAGACCCTCGAGTCAGTGAGAGGGACCTCGAAGATGAATTTCGTATATATGGTGTTCTTAGGAGTGTCTGGGTTGCTCGAAGACCACCGGGATATGCATTTATTGAGTTTGATGATAGGAGGGATGCACTTGATGCAATTCAGGCCTTGGATGGAAAAAATGGTTGGCGTGTAGAGCTTTCTCATAATTCCAAGGGTGGTGGCCGAGGAGGGCGTGGGCGTGGAGGTGAAGACACAAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGGGAGTGCCGATTGCGCATTGGATCACGTGGCCTTGGAAGTGGAAGGAGGCGAAGTCCAAGTCCTTATCGGCGTCGTAGAAGTCCGAGTTATGGTTATGATCGCAGTAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACCTCCCTGGGGTCGCAACTACAGCAGGTCCCCTCCATATCGTCCTCGCCGTGATTCACCTTATGCCAATGCAGATTAAAATCAGAATGTGAACGGAGCAAGTGCTGAATAGTTGTTAGGATGTTCTCTCTGCTATAGTGTAGTTCCTCTAGGATTGGTTGAGCATACCACAGACATGTTAGTTATGTTGATGTCATGACAATGGGTATTGTTAAGAACTTGGCTTTTGATGGAACTACATAGGGTTGTAGCTGGCAAAAGGGTGCGTTGGACACTGTTTTGCATTGGCTGTCTCTCTTCAGCTTACTGAAACCTGAAGGTTGCTTCAGTCTTCCCTACTTTATATAGCATGTTATGTTAATTGTTTGTTTTTAGTCTTACTAATCCACTATGGTAATTTTGATATATTTTTGCATTAAAGGTGCCTAAAATGTTCACGTTTCTTTGTTTTGAGGTGTGATTACCGGCCAAAACAGCACCATTTTGCCACTTACTACGTCTTGCCTGCTTCTCTGCTTCATGCCCCCTCAATCGTCTCATCTTGTTTCTGCATCTAAGTTGACTAAAAGTTCAATGTCAACAAGTTGGTTGTGTATGACCTTTTTGCTTACTGTTCAGGAAAGGAATGCTACATATGCATCCCCCTTAGGATTTGGAGGAGTCTAAAGGTGGATGATAGAATGTAGTCATTGGCTTGCTGTATCTTCATGAAATTAAGATAAATTAGGAATTATTTAGCGAGTAACTGCATATAGTGTCTGCTTCACACCATTCTATATGGTCATATTGATGGTTGCTGCTTCTAATTGTCTGCATCTTGATTAGAATGTTACTTGTTTCATCCGTGGTCTCTGATATATGCTTGCCGTTTGGGAGCAATGGTCATCATCTTGGTTGTGTAGGACACTGTATTGTGTATCCTCCTTCGGCAAATCACCTGTTGATCTATGATCTCTAAGGACTGGGACTAGAAAGAGTGATTCCATTTAACCAAATGAGTACTTGCCAAATGTCTTTCATTCTCCACTTGCTGCTCTGCTCTTTGTGATCTGTGTCCACAGCTTTCTCATTTGACTGATTAACTTTTGCATGCTTCTGTATGGAATTTTGTGTCATCTTCAGCTACTGGGATCTGTCACTTTGTCTCCCATCTGCAGTTTTGTTTTGCTAAATATCGTCCGCTCCTAATCAAGTGTATTAACTCCGGTTGATTGGAAGCATTGATTGCATTAAGATGTTTGAATTTGAGGAATTCGTTGCTTCTTGTCCTTGTCTTAGAATGTGAGTTTAGTGTTGCCACTTGCGTATAGCTCCATTAAGATTAGTTGATTTTGATCTGGTTAATTATGTTTTAAGTATTAAGTACCTTTTTTGTAAAAAAAAAGTATTGACTTGTCATG
Coding sequences of Glyma08g39830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g39830.1 sequence type=CDS gene model=Glyma08g39830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTCGTGTTTATGTTGGGAATTTAGACCCTCGAGTCAGTGAGAGGGACCTCGAAGATGAATTTCGTATATATGGTGTTCTTAGGAGTGTCTGGGTTGCTCGAAGACCACCGGGATATGCATTTATTGAGTTTGATGATAGGAGGGATGCACTTGATGCAATTCAGGCCTTGGATGGAAAAAATGGTTGGCGTGTAGAGCTTTCTCATAATTCCAAGGGTGGTGGCCGAGGAGGGCGTGGGCGTGGAGGTGAAGACACAAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGGGAGTGCCGATTGCGCATTGGATCACGTGGCCTTGGAAGTGGAAGGAGGCGAAGTCCAAGTCCTTATCGGCGTCGTAGAAGTCCGAGTTATGGTTATGATCGCAGTAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACCTCCCTGGGGTCGCAACTACAGCAGGTCCCCTCCATATCGTCCTCGCCGTGATTCACCTTATGCCAATGCGTATGTTTATGTTCAACTCAGTTGTTCTTTACTCTGA
>Glyma08g39830.5 sequence type=CDS gene model=Glyma08g39830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTCGTGTTTATGTTGGGAATTTAGACCCTCGAGTCAGTGAGAGGGACCTCGAAGATGAATTTCGTATATATGGTGTTCTTAGGAGTGTCTGGGTTGCTCGAAGACCACCGGGATATGCATTTATTGAGTTTGATGATAGGAGGGATGCACTTGATGCAATTCAGGCCTTGGATGGAAAAAATGGTTGGCGTGTAGAGCTTTCTCATAATTCCAAGGGTGGTGGCCGAGGAGGGCGTGGGCGTGGAGGTGAAGACACAAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGGGAGTGCCGATTGCGCATTGGATCACGTGGCCTTGGAAGTGGAAGGAGGCGAAGTCCAAGTCCTTATCGGCGTCGTAGAAGTCCGAGTTATGGTTATGATCGCAGTAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACCTCCCTGGGGTCGCAACTACAGCAGGTCCCCTCCATATCGTCCTCGCCGTGATTCACCTTATGCCAATGCAGATTAA
>Glyma08g39830.6 sequence type=CDS gene model=Glyma08g39830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTCGTGTTTATGTTGGGAATTTAGACCCTCGAGTCAGTGAGAGGGACCTCGAAGATGAATTTCGTATATATGGTGTTCTTAGGAGTGTCTGGGTTGCTCGAAGACCACCGGGATATGCATTTATTGAGTTTGATGATAGGAGGGATGCACTTGATGCAATTCAGGCCTTGGATGGAAAAAATGGTTGGCGTGTAGAGCTTTCTCATAATTCCAAGGGTGGTGGCCGAGGAGGGCGTGGGCGTGGAGGTGAAGACACAAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGGGAGTGCCGATTGCGCATTGGATCACGTGGCCTTGGAAGTGGAAGGAGGCGAAGTCCAAGTCCTTATCGGCGTCGTAGAAGTCCGAGTTATGGTTATGATCGCAGTAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACCTCCCTGGGGTCGCAACTACAGCAGGTCCCCTCCATATCGTCCTCGCCGTGATTCACCTTATGCCAATGCAGATTAA
Predicted protein sequences of Glyma08g39830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g39830.1 sequence type=predicted peptide gene model=Glyma08g39830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSRVYVGNLDPRVSERDLEDEFRIYGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGRGGRGRGGEDTKCYECGEPGHFARECRLRIGSRGLGSGRRRSPSPYRRRRSPSYGYDRSSYSPRGRRSPRRRSISPPWGRNYSRSPPYRPRRDSPYANAYVYVQLSCSLL*
>Glyma08g39830.5 sequence type=predicted peptide gene model=Glyma08g39830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSRVYVGNLDPRVSERDLEDEFRIYGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGRGGRGRGGEDTKCYECGEPGHFARECRLRIGSRGLGSGRRRSPSPYRRRRSPSYGYDRSSYSPRGRRSPRRRSISPPWGRNYSRSPPYRPRRDSPYANAD*
>Glyma08g39830.6 sequence type=predicted peptide gene model=Glyma08g39830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSRVYVGNLDPRVSERDLEDEFRIYGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGRGGRGRGGEDTKCYECGEPGHFARECRLRIGSRGLGSGRRRSPSPYRRRRSPSYGYDRSSYSPRGRRSPRRRSISPPWGRNYSRSPPYRPRRDSPYANAD*