Glyma08g39710 - SoyBase

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Report for Sequence Feature Glyma08g39710

Feature Type:	gene_model
Chromosome:	Gm08
Start:	39231918
stop:	39238664
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g39710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G60230	AT	Annotation by Michelle Graham. TAIR10: Radical SAM superfamily protein \| chr1:22212223-22214346 REVERSE LENGTH=458	SoyBase	E_val: 0	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008173	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA methyltransferase activity	SoyBase	N/A	ISS
GO:0051536	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding	SoyBase	N/A	ISS
PF04055	PFAM	Radical SAM superfamily	JGI		ISS
UniRef100_D7KXB2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Radical SAM domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KXB2_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1KXG4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KXG4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g39710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g39710

Paralog	Evidence	Comments
Glyma18g18961	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g39710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g287600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g39710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g39710

Limit To All Plant Sequences

>Glyma08g39710.4   sequence type=transcript   gene model=Glyma08g39710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATATATATATAAAAGATCTTTCTTGAAGAAGTGTCTGGTGAGGGATTTTTTAGGTTTGTAGTAGTGTCGTGTGAGTGAAGAGGCAATGAATGAAGCATGAAACATTGGATGAGCATGAGGCGCATGGCGGAGATGGTGACAGCGTTGCAATTTCAAACGAAGGTTTGAAGATGCTTCTCAAAGGGATGACTTATCCAGAACTTGAAAAATGGGTTCAATCACATGGATACAGGCCTGGGCAGGCTATGATGTTATGGAAGCGAATGTATGGAAACAACATTTGGGCCCATCATATTGATGAGTTGGAAGGTTTGAATAAAGATTTCAAGAAAATGTTGAATGAAAATGCCGAGTTCAAAGCGCTTACTCAGAAAGAAATTCGCACAGCATCTGATGGAACAAGAAAGATTTTATTCACATTGGAAGATGGGCTGGTCATAGAAACAGTTGTCATACCTTGTGACAGAGGTAGGACTACTGTGTGTGTTTCAAGTCAAGTTGGATGTGCTATGAATTGTCAATTTTGCTACACTGGAAGAATGGGTCTTAGGAGACATCTTACTGCTGCAGAAATAGTAGAGCAGGCTGTTTTTGCCAGACGGCTGCTCACTGATGAAGTTGGTTCCATTACAAATGTTGTCTTTATGGGCATGGGGGAACCACTTCATAACATTGATAATGTCATTAAAGCTGCAGATATAATGGTGGATGAGCAAGGGCTTCAGTTCAGTCCCCGCAAGGTCACCATTTCAACCAGCGGGCTTGTTCCACAGCTTAAACGTTTCCTCCATGAATCAAACTGTGCATTAGCTGTTAGTTTGAATGCAACTACTGATGAGGTAAGAAACTGGATCATGCCTATAAATCGAAAGTACAAGCTGGAGTTGCTTCTTCAGACACTTCGAGAGGAGCTTTGCTTCAAAAAGAACTACAAAGTTCTATTTGAGTATGTGATGCTTGAAGGAGTTAATGACAGCGATGGAGATGCAGAGAGGCTTATCGAGCTTGTGAAGGGAATTCCTTGCAAGATTAATCTTATCTCATTCAATCCACACAGTGGATCATTCTTCAAACCAACCAAAGATGAAAGAATGATTGAATTCCGGAATACATTGGCTGGTGCAGGATTGGTAGTCATTTTAAGACTTAGTAGAGGTGATGATCAAATGGCTGCCTGTGGTCAATTGGGTAAGCCTGGCACCATTCAAGCTCCATTGCTTCGTGTACCAGAGCAATTCCAAATGGCAATTGGAAGTTCAGCTTGATTCTTTGTGGAGGTTCTGTTGCAAATTGATCTAGGACACTTGTGGTGGAGGTAGCTAGGGATGACTTCATGCTGAGAATGCAAGACAAAGAGCTATATTTGGAGGATATCTGTCTGTTTCCATATTGTACTTTTCCATTTTACAGTTAATTTATATTTATTTTTATAAATGTGAAGGATCGAGATTCCTTGCCGGCTAAGAAGTAAGAAATAAAAATAGTTTAAATGTTTTTATTCTCTCAAATACGTTTGTTCTTTTTTAGTTTTCGAAATTAAAATTTGCATTTTTTAATTACTCATTCAT

Coding sequences of Glyma08g39710

Limit To All Plant Sequences

>Glyma08g39710.1   sequence type=CDS   gene model=Glyma08g39710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACATTGGATGAGCATGAGGCGCATGGCGGTAGGAGCAGTCTCAAACTCCACTCTTTTTCTACCTTCCTCTCTTCTATCTTCTTCTAAACCTAATCCCTTAACTATCCCATTCTCCTTCTATCTCACCAAAACGTCACCGTTTTCCATTTCTGTTCTCACTCGCCAACGCCGCTTCCTTTCCGTTTCTTCTTTAACCGCTGACCACCACAACCTCTCTGATTTCGGAGATGGTGACAGCGTTGCAATTTCAAACGAAGGTTTGAAGATGCTTCTCAAAGGGATGACTTATCCAGAACTTGAAAAATGGGTTCAATCACATGGATACAGGCCTGGGCAGGCTATGATGTTATGGAAGCGAATGTATGGAAACAACATTTGGGCCCATCATATTGATGAGTTGGAAGGTTTGAATAAAGATTTCAAGAAAATGTTGAATGAAAATGCCGAGTTCAAAGCGCTTACTCAGAAAGAAATTCGCACAGCATCTGATGGAACAAGAAAGATTTTATTCACATTGGAAGATGGGCTGGTCATAGAAACAGTTGTCATACCTTGTGACAGAGGTAGGACTACTGTGTGTGTTTCAAGTCAAGTTGGATGTGCTATGAATTGTCAATTTTGCTACACTGGAAGAATGGGTCTTAGGAGACATCTTACTGCTGCAGAAATAGTAGAGCAGGCTGTTTTTGCCAGACGGCTGCTCACTGATGAAGTTGGTTCCATTACAAATGTTGTCTTTATGGGCATGGGGGAACCACTTCATAACATTGATAATGTCATTAAAGCTGCAGATATAATGGTGGATGAGCAAGGGCTTCAGTTCAGTCCCCGCAAGGTCACCATTTCAACCAGCGGGCTTGTTCCACAGCTTAAACGTTTCCTCCATGAATCAAACTGTGCATTAGCTGTTAGTTTGAATGCAACTACTGATGAGGTAAGAAACTGGATCATGCCTATAAATCGAAAGTACAAGCTGGAGTTGCTTCTTCAGACACTTCGAGAGGAGCTTTGCTTCAAAAAGAACTACAAAGTTCTATTTGAGTATGTGATGCTTGAAGGAGTTAATGACAGCGATGGAGATGCAGAGAGGCTTATCGAGCTTGTGAAGGGAATTCCTTGCAAGATTAATCTTATCTCATTCAATCCACACAGTGGATCATTCTTCAAACCAACCAAAGATGAAAGAATGATTGAATTCCGGAATACATTGGCTGGTGCAGGATTGGTAGTCATTTTAAGACTTAGTAGAGGTGATGATCAAATGGCTGCCTGTGGTCAATTGGGTAAGCCTGGCACCATTCAAGCTCCATTGCTTCGTGTACCAGAGCAATTCCAAATGGCAATTGGAAGTTCAGCTTGA

>Glyma08g39710.4   sequence type=CDS   gene model=Glyma08g39710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCATGAAACATTGGATGAGCATGAGGCGCATGGCGGAGATGGTGACAGCGTTGCAATTTCAAACGAAGGTTTGAAGATGCTTCTCAAAGGGATGACTTATCCAGAACTTGAAAAATGGGTTCAATCACATGGATACAGGCCTGGGCAGGCTATGATGTTATGGAAGCGAATGTATGGAAACAACATTTGGGCCCATCATATTGATGAGTTGGAAGGTTTGAATAAAGATTTCAAGAAAATGTTGAATGAAAATGCCGAGTTCAAAGCGCTTACTCAGAAAGAAATTCGCACAGCATCTGATGGAACAAGAAAGATTTTATTCACATTGGAAGATGGGCTGGTCATAGAAACAGTTGTCATACCTTGTGACAGAGGTAGGACTACTGTGTGTGTTTCAAGTCAAGTTGGATGTGCTATGAATTGTCAATTTTGCTACACTGGAAGAATGGGTCTTAGGAGACATCTTACTGCTGCAGAAATAGTAGAGCAGGCTGTTTTTGCCAGACGGCTGCTCACTGATGAAGTTGGTTCCATTACAAATGTTGTCTTTATGGGCATGGGGGAACCACTTCATAACATTGATAATGTCATTAAAGCTGCAGATATAATGGTGGATGAGCAAGGGCTTCAGTTCAGTCCCCGCAAGGTCACCATTTCAACCAGCGGGCTTGTTCCACAGCTTAAACGTTTCCTCCATGAATCAAACTGTGCATTAGCTGTTAGTTTGAATGCAACTACTGATGAGGTAAGAAACTGGATCATGCCTATAAATCGAAAGTACAAGCTGGAGTTGCTTCTTCAGACACTTCGAGAGGAGCTTTGCTTCAAAAAGAACTACAAAGTTCTATTTGAGTATGTGATGCTTGAAGGAGTTAATGACAGCGATGGAGATGCAGAGAGGCTTATCGAGCTTGTGAAGGGAATTCCTTGCAAGATTAATCTTATCTCATTCAATCCACACAGTGGATCATTCTTCAAACCAACCAAAGATGAAAGAATGATTGAATTCCGGAATACATTGGCTGGTGCAGGATTGGTAGTCATTTTAAGACTTAGTAGAGGTGATGATCAAATGGCTGCCTGTGGTCAATTGGGTAAGCCTGGCACCATTCAAGCTCCATTGCTTCGTGTACCAGAGCAATTCCAAATGGCAATTGGAAGTTCAGCTTGA

Predicted protein sequences of Glyma08g39710

Limit To All Plant Sequences

>Glyma08g39710.1   sequence type=predicted peptide   gene model=Glyma08g39710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKHWMSMRRMAVGAVSNSTLFLPSSLLSSSKPNPLTIPFSFYLTKTSPFSISVLTRQRRFLSVSSLTADHHNLSDFGDGDSVAISNEGLKMLLKGMTYPELEKWVQSHGYRPGQAMMLWKRMYGNNIWAHHIDELEGLNKDFKKMLNENAEFKALTQKEIRTASDGTRKILFTLEDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLRRHLTAAEIVEQAVFARRLLTDEVGSITNVVFMGMGEPLHNIDNVIKAADIMVDEQGLQFSPRKVTISTSGLVPQLKRFLHESNCALAVSLNATTDEVRNWIMPINRKYKLELLLQTLREELCFKKNYKVLFEYVMLEGVNDSDGDAERLIELVKGIPCKINLISFNPHSGSFFKPTKDERMIEFRNTLAGAGLVVILRLSRGDDQMAACGQLGKPGTIQAPLLRVPEQFQMAIGSSA*

>Glyma08g39710.4   sequence type=predicted peptide   gene model=Glyma08g39710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKHETLDEHEAHGGDGDSVAISNEGLKMLLKGMTYPELEKWVQSHGYRPGQAMMLWKRMYGNNIWAHHIDELEGLNKDFKKMLNENAEFKALTQKEIRTASDGTRKILFTLEDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLRRHLTAAEIVEQAVFARRLLTDEVGSITNVVFMGMGEPLHNIDNVIKAADIMVDEQGLQFSPRKVTISTSGLVPQLKRFLHESNCALAVSLNATTDEVRNWIMPINRKYKLELLLQTLREELCFKKNYKVLFEYVMLEGVNDSDGDAERLIELVKGIPCKINLISFNPHSGSFFKPTKDERMIEFRNTLAGAGLVVILRLSRGDDQMAACGQLGKPGTIQAPLLRVPEQFQMAIGSSA*

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