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Report for Sequence Feature Glyma08g39673

Feature Type:gene_model
Chromosome:Gm08
Start:39163490
stop:39165043
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g39673
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G70370AT Annotation by Michelle Graham. TAIR10: polygalacturonase 2 | chr1:26513003-26514998 REVERSE LENGTH=626 SoyBaseE_val: 4.00E-109ISS
GO:0000271GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process SoyBaseN/AISS
GO:0000272GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process SoyBaseN/AISS
GO:0005982GO-bp Annotation by Michelle Graham. GO Biological Process: starch metabolic process SoyBaseN/AISS
GO:0007389GO-bp Annotation by Michelle Graham. GO Biological Process: pattern specification process SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0008361GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell size SoyBaseN/AISS
GO:0009664GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization SoyBaseN/AISS
GO:0009825GO-bp Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth SoyBaseN/AISS
GO:0009832GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis SoyBaseN/AISS
GO:0009926GO-bp Annotation by Michelle Graham. GO Biological Process: auxin polar transport SoyBaseN/AISS
GO:0009932GO-bp Annotation by Michelle Graham. GO Biological Process: cell tip growth SoyBaseN/AISS
GO:0010015GO-bp Annotation by Michelle Graham. GO Biological Process: root morphogenesis SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0010817GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels SoyBaseN/AISS
GO:0040007GO-bp Annotation by Michelle Graham. GO Biological Process: growth SoyBaseN/AISS
GO:0043481GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light SoyBaseN/AISS
GO:0048653GO-bp Annotation by Michelle Graham. GO Biological Process: anther development SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0004650GO-mf Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity SoyBaseN/AISS
UniRef100_G7K1D9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase-1 non-catalytic subunit beta n=1 Tax=Medicago truncatula RepID=G7K1D9_MEDTR SoyBaseE_val: 2.00E-113ISS
UniRef100_I1KXG3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXG3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g39673
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g39673 not represented in the dataset
Glyma08g39673 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g39673 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g287400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g39673
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma08g39673
>Glyma08g39673.2   sequence type=transcript   gene model=Glyma08g39673   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCACGTTAAATTCTTGTGTTTGTTATTATTTTTATTATTGTGTAAACTTTATTGTGTTCTTACGATATTTTATTTTGTGAATATAGATAATTTTATTTGTGAGAATATGGATTATCCAACACAGCATTCTCAACCCTCTCCTTATTCTCTTCTTTCTCTGGTCACCACCCATTGTGAAAACCAAAGGAATTAAAGTTCATTCATTTAAAAAATAAAGTAAAGATAAAAATAACATGCACAACCTCAGCACTCTTTCTTCATCCTTCTTTCAACACTACTAACTGTTGGTTACGGTGGTCGCAACTTAGGAGATAAAAACCCGTTCACCCCGAAGGCTTACGTGGCACGTTATTGGGACAAACACGTCCTCAACAACTTGCCAAAGCCGTCGTTTCTTCTCTCAAAAGCATCCTCAATGAGCGCTTCCGACACGACGTCGTTCGCCAAGCTCGCCGCCGCGAACAAACTCTCCACGCGCCTGCCGGAGTTCTGCTCCGCCGCGCACCTCCTCTGCTTCCAGGAGGTCCGGCCTAGCCTCGAGAAACACACCGAAGATGCCGGTTTTGAAACCTACAACGACGGCCAGAACTTCACCAATTACGGCATCTACTTCGCCGGCGGAATCGACGCCTTCAAAAACTACTCCAAAACCATTCTAGTGAACGATTTCCGGCGCTACAGTCGCAGCTCAGCCGGCCACGGCGAGAGCTTCACTGGCTACGGCGAGGACACCAACGTTGCCGACAAGAGCTTCCACACTTACAGCACCAACGCCGGCGGAGGCTCCGGCGAGTTCAAAAACTATTCCAGCAACTCTAACGTTCCCGACGTGCGATTCGCCACCTACTTCGATAGCATCGGTGGGAGAACACAATCGTTCTCAAGCAACAACGAGGACGACAACTACGACAGGCAGAGTTTCCAATCCTACGGCAAGAACTCCGCCGACGCGGCAAACTCATTCGCCGGCTACGGAACAAACTCCAACGTTGCCACGTTGGCTTTCATAAATTATGGCGTTGAGATGAACGTTCCAGAAGTGACTTTCAAGAGCTACGCTGTTAGAACTCACGCTAGCACTGAGAGTTTTGCTAATTACAGAGACCAGGCTAACATAGCTGATGACTCGTTTCAATCTTATGCTAAGAACACCAAAGAAAGGACCAAACTGGATTTCAAAAACTACGGGAATTCTTTTAACCCTGGTTCGGATACTTTCAAAGGCTATGCTAAAGGCGCAGAAGGGGATCACAAGGTTGGCTTCACAACCTACAACGTTAACACTAATGCTACGTTTAAGGATTACGCCAAACAGGGCGTATCCTTTGCTAGTTACAACGTATCTTTCTCTTCCTCTTCAGAATCTAAAACTATTAGACGCAGTTTTTCTCCTTTTCTGATAGAGATAAATTGTTTCACCCTTTGGAAGAAAACCGTGGGTATGTAATAGTCACTGAATTATATAAGCATGTGTTTG
Coding sequences of Glyma08g39673
>Glyma08g39673.1   sequence type=CDS   gene model=Glyma08g39673   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGTTGGTTACGGTGGTCGCAACTTAGGAGATAAAAACCCGTTCACCCCGAAGGCTTACGTGGCACGTTATTGGGACAAACACGTCCTCAACAACTTGCCAAAGCCGTCGTTTCTTCTCTCAAAAGCATCCTCAATGAGCGCTTCCGACACGACGTCGTTCGCCAAGCTCGCCGCCGCGAACAAACTCTCCACGCGCCTGCCGGAGTTCTGCTCCGCCGCGCACCTCCTCTGCTTCCAGGAGGTCCGGCCTAGCCTCGAGAAACACACCGAAGATGCCGGTTTTGAAACCTACAACGACGGCCAGAACTTCACCAATTACGGCATCTACTTCGCCGGCGGAATCGACGCCTTCAAAAACTACTCCAAAACCATTCTAGTGAACGATTTCCGGCGCTACAGTCGCAGCTCAGCCGGCCACGGCGAGAGCTTCACTGGCTACGGCGAGGACACCAACGTTGCCGACAAGAGCTTCCACACTTACAGCACCAACGCCGGCGGAGGCTCCGGCGAGTTCAAAAACTATTCCAGCAACTCTAACGTTCCCGACGTGCGATTCGCCACCTACTTCGATAGCATCGGTGGGAGAACACAATCGTTCTCAAGCAACAACGAGGACGACAACTACGACAGGCAGAGTTTCCAATCCTACGGCAAGAACTCCGCCGACGCGGCAAACTCATTCGCCGGCTACGGAACAAACTCCAACGTTGCCACGTTGGCTTTCATAAATTATGGCGTTGAGATGAACGTTCCAGAAGTGACTTTCAAGAGCTACGCTGTTAGAACTCACGCTAGCACTGAGAGTTTTGCTAATTACAGAGACCAGGCTAACATAGCTGATGACTCGTTTCAATCTTATGCTAAGAACACCAAAGAAAGGACCAAACTGGATTTCAAAAACTACGGGAATTCTTTTAACCCTGGTTCGGATACTTTCAAAGGCTATGCTAAAGGCGCAGAAGGGGATCACAAGGTTGGCTTCACAACCTACAACGTTAACACTAATGCTACGTTTAAGGATTACGCCAAACAGGGCGTATCCTTTGCTAGTTACAACGTATCTTTCTCTTCCTCTTCAGAATCTAAAACTATTAGACGCAGTTTTTCTCCTTTTCTGATAGAGATAAATTGTTTCACCCTTTGGAAGAAAACCGTGGGTATGTAA

>Glyma08g39673.2   sequence type=CDS   gene model=Glyma08g39673   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGCTTCCGACACGACGTCGTTCGCCAAGCTCGCCGCCGCGAACAAACTCTCCACGCGCCTGCCGGAGTTCTGCTCCGCCGCGCACCTCCTCTGCTTCCAGGAGGTCCGGCCTAGCCTCGAGAAACACACCGAAGATGCCGGTTTTGAAACCTACAACGACGGCCAGAACTTCACCAATTACGGCATCTACTTCGCCGGCGGAATCGACGCCTTCAAAAACTACTCCAAAACCATTCTAGTGAACGATTTCCGGCGCTACAGTCGCAGCTCAGCCGGCCACGGCGAGAGCTTCACTGGCTACGGCGAGGACACCAACGTTGCCGACAAGAGCTTCCACACTTACAGCACCAACGCCGGCGGAGGCTCCGGCGAGTTCAAAAACTATTCCAGCAACTCTAACGTTCCCGACGTGCGATTCGCCACCTACTTCGATAGCATCGGTGGGAGAACACAATCGTTCTCAAGCAACAACGAGGACGACAACTACGACAGGCAGAGTTTCCAATCCTACGGCAAGAACTCCGCCGACGCGGCAAACTCATTCGCCGGCTACGGAACAAACTCCAACGTTGCCACGTTGGCTTTCATAAATTATGGCGTTGAGATGAACGTTCCAGAAGTGACTTTCAAGAGCTACGCTGTTAGAACTCACGCTAGCACTGAGAGTTTTGCTAATTACAGAGACCAGGCTAACATAGCTGATGACTCGTTTCAATCTTATGCTAAGAACACCAAAGAAAGGACCAAACTGGATTTCAAAAACTACGGGAATTCTTTTAACCCTGGTTCGGATACTTTCAAAGGCTATGCTAAAGGCGCAGAAGGGGATCACAAGGTTGGCTTCACAACCTACAACGTTAACACTAATGCTACGTTTAAGGATTACGCCAAACAGGGCGTATCCTTTGCTAGTTACAACGTATCTTTCTCTTCCTCTTCAGAATCTAAAACTATTAGACGCAGTTTTTCTCCTTTTCTGATAGAGATAAATTGTTTCACCCTTTGGAAGAAAACCGTGGGTATGTAA
Predicted protein sequences of Glyma08g39673
>Glyma08g39673.1   sequence type=predicted peptide   gene model=Glyma08g39673   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQVGYGGRNLGDKNPFTPKAYVARYWDKHVLNNLPKPSFLLSKASSMSASDTTSFAKLAAANKLSTRLPEFCSAAHLLCFQEVRPSLEKHTEDAGFETYNDGQNFTNYGIYFAGGIDAFKNYSKTILVNDFRRYSRSSAGHGESFTGYGEDTNVADKSFHTYSTNAGGGSGEFKNYSSNSNVPDVRFATYFDSIGGRTQSFSSNNEDDNYDRQSFQSYGKNSADAANSFAGYGTNSNVATLAFINYGVEMNVPEVTFKSYAVRTHASTESFANYRDQANIADDSFQSYAKNTKERTKLDFKNYGNSFNPGSDTFKGYAKGAEGDHKVGFTTYNVNTNATFKDYAKQGVSFASYNVSFSSSSESKTIRRSFSPFLIEINCFTLWKKTVGM*

>Glyma08g39673.2   sequence type=predicted peptide   gene model=Glyma08g39673   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSASDTTSFAKLAAANKLSTRLPEFCSAAHLLCFQEVRPSLEKHTEDAGFETYNDGQNFTNYGIYFAGGIDAFKNYSKTILVNDFRRYSRSSAGHGESFTGYGEDTNVADKSFHTYSTNAGGGSGEFKNYSSNSNVPDVRFATYFDSIGGRTQSFSSNNEDDNYDRQSFQSYGKNSADAANSFAGYGTNSNVATLAFINYGVEMNVPEVTFKSYAVRTHASTESFANYRDQANIADDSFQSYAKNTKERTKLDFKNYGNSFNPGSDTFKGYAKGAEGDHKVGFTTYNVNTNATFKDYAKQGVSFASYNVSFSSSSESKTIRRSFSPFLIEINCFTLWKKTVGM*






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