Glyma08g39660 - SoyBase

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Report for Sequence Feature Glyma08g39660

Feature Type:	gene_model
Chromosome:	Gm08
Start:	39151686
stop:	39156554
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g39660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G02850	AT	Annotation by Michelle Graham. TAIR10: hydroxyproline-rich glycoprotein family protein \| chr5:652159-653439 FORWARD LENGTH=426	SoyBase	E_val: 2.00E-129	ISS
GO:0006357	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription from RNA polymerase II promoter	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016592	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mediator complex	SoyBase	N/A	ISS
PF10018	PFAM	Vitamin-D-receptor interacting Mediator subunit 17t	JGI		ISS
UniRef100_I1KXG2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXG2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LZ00	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Arabidopsis thaliana RepID=MED4_ARATH	SoyBase	E_val: 1.00E-126	ISS

Expression Patterns of Glyma08g39660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g39660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g287300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g39660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g39660

Limit To All Plant Sequences

>Glyma08g39660.1   sequence type=CDS   gene model=Glyma08g39660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCAACACCAAATTGTTCAGTCCCCTGCTAGGCTAGGCCTCGCAAATCCTAACTCCCCATCAATTCCAAACCCTACCCCTCCGAAGCTCCCTCCAACACAGACCCATCACCCCCAAGACCGCAACTCCTCAACCCCTTCTTCAGCTCTCTTGTCTCTCCTCCCACCCCTCCCCAGAGCCCAAGCACTTCTTGCCCAAATGGCTTCCTTAGCTTCCAAGCTCTTTGATGTTTCCCCTAATCGGTCCCTTTGGGTCACCGCCTTCCGTGGATCCCTTCCAACTTTCCTCTCTTCTCATTCGTCTACCCCACTTGACACTTCTCCTTCTAATGCCAAAGAAATCATCTCCCTTTTTACTGTTCTCCAAACCCAAATCTTTGAAGCCGTTGCTGAACTCCAAGAGATTCTTGACCTCCAAGATGCCAAGCAAAAGATTGACCGCGAAATTCGCTCCCAAGATTCAACACTTCTTGCATTTGCCAACAAACTCAAAGAGGCTGAGAGCTGCCTCGATATCCTTGTTGACGATTACTCTGATTACCGCCGCTCCAAGCGATCAAAATCTGGAGATGATGATTCCATGACTTCATCAACTGTCTCGTCTCAGCTGAAGCTGTCGGATATATTATCATATGCCCACCGGATAAGTTACACCACCTTTGCACCACCAGAATTTGGAGCTGGCCAAGCTCCTCTCCGTGGCGCACTGCCACCTGCGCCACAAGAAGAGCAAATGAGAGCTTCGCAATTGTATAATTTTGCTGACCTTGATGTTGGATTGCCTAAAGAAGTTGAAACCAAGGAGAAAATTGTTGAAGCTATTGTTGAGCCTCCACCACAGGTGGATACCAATGCAGTTCCGAATTTGTCTGCATTTCAAGGAATGTTACCTCCGATGCCACCTGGCTGGAAGCCGGGAATGCCTGTGCAACTGCCAATTGATTTGCCACTGCCCCCGCCTGGGTGGAAACCAGGGGATCCTGTGCCATTGCCTCCCATGGACTCGCTTCAAATACCGAGATTTGCAGAGCAACAAATGCAACCTCACATTCCTCAGCCCAAACAACCAGAAGTTATTCAAGTGCAACCAGTTAATTTGGACCTTGGAGGAAGTGATACTAGTGATTATAGTAGTGATGATGCCAGCTCTGATGATGAAGATTGA

Predicted protein sequences of Glyma08g39660

Limit To All Plant Sequences

>Glyma08g39660.1   sequence type=predicted peptide   gene model=Glyma08g39660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQHQIVQSPARLGLANPNSPSIPNPTPPKLPPTQTHHPQDRNSSTPSSALLSLLPPLPRAQALLAQMASLASKLFDVSPNRSLWVTAFRGSLPTFLSSHSSTPLDTSPSNAKEIISLFTVLQTQIFEAVAELQEILDLQDAKQKIDREIRSQDSTLLAFANKLKEAESCLDILVDDYSDYRRSKRSKSGDDDSMTSSTVSSQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKEVETKEKIVEAIVEPPPQVDTNAVPNLSAFQGMLPPMPPGWKPGMPVQLPIDLPLPPPGWKPGDPVPLPPMDSLQIPRFAEQQMQPHIPQPKQPEVIQVQPVNLDLGGSDTSDYSSDDASSDDED*

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