SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G14740 | AT | Annotation by Michelle Graham. TAIR10: carbonic anhydrase 2 | chr5:4760536-4762382 FORWARD LENGTH=259 | SoyBase | E_val: 2.00E-131 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0015976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbon utilization | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:0019684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0043900 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0004089 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbonate dehydratase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1578 | KOG | Predicted carbonic anhydrase involved in protection against oxidative damage | JGI | ISS | |
| PTHR11002 | Panther | CARBONIC ANHYDRASE | JGI | ISS | |
| PTHR11002:SF1 | Panther | CARBONIC ANHYDRASE-RELATED | JGI | ISS | |
| PF00484 | PFAM | Carbonic anhydrase | JGI | ISS | |
| UniRef100_I1KXF9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Carbonic anhydrase n=2 Tax=Glycine max RepID=I1KXF9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KXF9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Carbonic anhydrase n=2 Tax=Glycine max RepID=I1KXF9_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma08g39510 not represented in the dataset |
Glyma08g39510 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g19080 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g286700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g39510.2 sequence type=CDS gene model=Glyma08g39510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGGAGGATCATACGAGGAAGCCATTGCAGCGTTGACGAAGCTTCTCAGCGAGAAAGCCGACCTGGGTGGTGTCGCCGCCGCAAAGATAAAACAGCTGACGGCGGAGCTGGATACCGCCACCGCAAACGGGTCGACGCCGTTTAACCCGGACGAGAGGATCCGAACCGGGTTCGCCCACTTCAAGAACGAGAAATACCAGAAGAACCCGGAATTATATGGCGAACTTGCCAAAGGCCAGAGTCCAAAGTTTATGGTTTTTGCTTGCTCAGACTCTCGAGTTTGCCCATCCCACATTCTGGATTTCAATCCGGGTGAAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAGACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTAAAGGTGGAGAATATTGTGGTCATTGGGCACAGCTGCTGTGGAGGTATAAAGGGCCTAATGTCTATCCCAGATGATGGGACCACTGCAAGTGAATTCATAGAGCACTGGGTCCAAATTTGCACTCCAGCAAAGTCCAAGGTTAAAACAGAAGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGGAAGCTGTGAATGTATCACTTGGGAACCTATTGACATATCGATTTGTGAGAGATGCAGTTGTGAAGAAAACTCTTGCCTTGAAAGGTGCACATTACAATTTCGTTAAGGGCACATTTGAGCTGTGGGATCTGGACTTGAAAATCTCTAACTCTGTATCCGTTTAA
>Glyma08g39510.2 sequence type=predicted peptide gene model=Glyma08g39510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGGSYEEAIAALTKLLSEKADLGGVAAAKIKQLTAELDTATANGSTPFNPDERIRTGFAHFKNEKYQKNPELYGELAKGQSPKFMVFACSDSRVCPSHILDFNPGEAFVVRNIANMVPPYDKTKYSGTGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDDGTTASEFIEHWVQICTPAKSKVKTEANTLEFSEQCTSCEKEAVNVSLGNLLTYRFVRDAVVKKTLALKGAHYNFVKGTFELWDLDLKISNSVSV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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