Glyma08g39480 - SoyBase

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Report for Sequence Feature Glyma08g39480

Feature Type:	gene_model
Chromosome:	Gm08
Start:	39007448
stop:	39013941
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g39480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G23540	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr1:8346942-8349786 REVERSE LENGTH=720	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0032502	GO-bp	Annotation by Michelle Graham. GO Biological Process: developmental process	SoyBase	N/A	ISS
GO:0048610	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular process involved in reproduction	SoyBase	N/A	ISS
GO:0048868	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube development	SoyBase	N/A	ISS
GO:0051510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF644	Panther		JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_E5GBJ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase family protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GBJ3_CUCME	SoyBase	E_val: 0	ISS
UniRef100_UPI000233853D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233853D related cluster n=1 Tax=unknown RepID=UPI000233853D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g39480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g39480

Paralog	Evidence	Comments
Glyma18g19100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g39480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g286600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g39480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g39480

Limit To All Plant Sequences

>Glyma08g39480.1   sequence type=CDS   gene model=Glyma08g39480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTACAAAACATACCGAAGAGGACAATGATTCTTCTTATCTAACTATACCTAACAAAGATAAAAGGAAACAAAAGAGTTCTCATGATAATGACAAGGAATCGGCTCCATCTCCAAAGCCTCCTGATTTAGATACTCAGGAGAGTGCTCCGTCCAACTCCCCACCGCCATCACCACCGCCACCACCGCCTCAGTTGAAACTGCCAATATTATCACCACCTCGGTTGAAACCTTCCTCAATATCATTGTTGTCACCACCATCTAAAGATTTAAGTGGATCACCATCATGGTCACCGCCACCTCCACCATCACGGTCACCATCACCTCCATCATCCTTGTCATTGCTTTCATCGTCATCACCCCCACCATCACCTTCATCACCCCCACCACCACCTTCATCGCCCCCACCACCACCACCACCTTCATCACCCCCACCACCACCTTCATCGCCCGCACCACCACAATCAGTGCCATTGCGCAATAACGGCAATCCTTCTCCTCCTCCTCCTTATTATCCACGTAAACAGTCACCGCCACAATTCCATGCTCCACCTCCTCCTTCTTCGCTTCCTCGTAATGCACCCTCCAATGATTCAACTCCGCGAACCTCTGACAAGCCACGATCAGGCCACCATGGCAAGCATGGTGGTGCTACTTCTTCCCATACAAACTCAACGGGTTCTTCTCCCAATCAAACCTCTTCTGATGATAATTCAGAAAAATATATTGGCTACACACTCATTGGGATTTTTGCTGTTGCCTTGGTTGCCCTAGCTGTATCTCTTGTTTTCGTGTTTAAGAAGAAAAAATCAAGAGGGGATGCCCATGTTACACCCTATATGCCACCCCTTAATATTCATGTAAAATCAGGTGTTAATGGGCATTACTATGTACAGCAGCCTATCCCATCACCTCCCCTTGCAAACAACTATGGAAATGGGAATGCGAGCATGCACCATTTAGGAGCTTCTTTCGACTCAGCTCAGTTCAAAAGTGCTCAGATAGTTTTTACCTATGAAATGGTTATGGAAATGACCAATGCCTTTTCTACTCAAAATGTTATTGGGGAAGGAGGGTTTGGGTGTGTTTACAAAGGTTGGCTGCCAGATGGAAAAGCAGTTGCAGTAAAGCAGCTTAAGGCCGGCGGTAGGCAGGGAGAAAGGGAATTCAAGGCTGAAGTGGAGATCATCAGCCGAGTTCATCATCGGCATTTGGTGTCATTAGTTGGTTATTGCATATGCGAGCAGCAAAGAATTCTTATCTATGAGTATGTTCCTAATGGAACACTCCATCATCACTTGCATGCAAGTGGAATGCCAGTATTGAATTGGGACAAGAGGCTAAAGATTGCAATAGGCGCTGCAAAGGGCCTGGCATATCTGCATGAGGACTGCTGCCAAAAGATTATTCACAGAGATATAAAGTCCGCAAACATACTTTTGGATAATGCTTATGAGGCACAGGTTGCTGACTTTGGACTTGCGAGGTTAGCCGATGCTTCCAATACCCATGTATCAACTAGGGTTATGGGGACCTTTGGGTACATGGCTCCAGAATATGCAACAAGTGGAAAATTAACGGATAGATCAGATGTTTTCTCATTTGGGGTTGTCCTCCTTGAGCTTGTAACTGGAAGGAAACCCGTTGATCAAACTCAGCCTTTGGGAGATGAGAGTTTGGTTGAGTGGGCTCGTCCACTTCTCCTTCGTGCAATTGAGACACGTGATTTTAGTGATCTAATAGATCCAAGACTCAAAAAACACTTTGTGGAGAATGAAATGCTCAGAATGGTTGAGGTGGCCGCCGCTTGTGTTCGCCACTCAGCTCCTAGACGGCCTCGTATGGTTCAGGTGGTAAGATCCTTGGATTGTGGAGACGAAAGTTCTGATCTATCTAATGGGGTGAAATATGGTCATAGCACGGTTTATGATTCTGGTCAATATGATAAAGAAATTATGCTATTCAGAAGGTTGGCCAATGGAACCTTTGTCGATTCTGATTTTGAGATATATAGTAGAGAATACAGTTTGTCAAGAGACACCTCAATGACCTCAAGAGGATCCCACCAAGAATTGATACGACATAGTTCTAGTGGGAGTTTGAATCTAGAGCTATCAACATGCATAGGACCAGTATTGAATGAAAACAGGGATTGA

Predicted protein sequences of Glyma08g39480

Limit To All Plant Sequences

>Glyma08g39480.1   sequence type=predicted peptide   gene model=Glyma08g39480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTKHTEEDNDSSYLTIPNKDKRKQKSSHDNDKESAPSPKPPDLDTQESAPSNSPPPSPPPPPPQLKLPILSPPRLKPSSISLLSPPSKDLSGSPSWSPPPPPSRSPSPPSSLSLLSSSSPPPSPSSPPPPPSSPPPPPPPSSPPPPPSSPAPPQSVPLRNNGNPSPPPPYYPRKQSPPQFHAPPPPSSLPRNAPSNDSTPRTSDKPRSGHHGKHGGATSSHTNSTGSSPNQTSSDDNSEKYIGYTLIGIFAVALVALAVSLVFVFKKKKSRGDAHVTPYMPPLNIHVKSGVNGHYYVQQPIPSPPLANNYGNGNASMHHLGASFDSAQFKSAQIVFTYEMVMEMTNAFSTQNVIGEGGFGCVYKGWLPDGKAVAVKQLKAGGRQGEREFKAEVEIISRVHHRHLVSLVGYCICEQQRILIYEYVPNGTLHHHLHASGMPVLNWDKRLKIAIGAAKGLAYLHEDCCQKIIHRDIKSANILLDNAYEAQVADFGLARLADASNTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELVTGRKPVDQTQPLGDESLVEWARPLLLRAIETRDFSDLIDPRLKKHFVENEMLRMVEVAAACVRHSAPRRPRMVQVVRSLDCGDESSDLSNGVKYGHSTVYDSGQYDKEIMLFRRLANGTFVDSDFEIYSREYSLSRDTSMTSRGSHQELIRHSSSGSLNLELSTCIGPVLNENRD*

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