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Report for Sequence Feature Glyma08g39440

Feature Type:gene_model
Chromosome:Gm08
Start:38981510
stop:38982826
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g39440
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G23530AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70470.1); Has 38 Blast hits to 38 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:8345861-8346430 FORWARD LENGTH=189 SoyBaseE_val: 5.00E-13ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1KXF4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXF4_SOYBN SoyBaseE_val: 6.00E-129ISS

Expression Patterns of Glyma08g39440
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g39440 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g286300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g39440
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g39440
>Glyma08g39440.1   sequence type=CDS   gene model=Glyma08g39440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTTCAAGCTCAACCACAACAACAACCACAACAACCAGTCCAAGTTTACCCAACAAATCAGCCACCTTCATCTTCTCATCACTCAAATGGGTCATTTGGGGCAGTTTTCATTGTCCTTGCCATAATACTAGTCATTTCTGTAGTTGCATGCTTTCTAGGGCGCCTTTGCAACAAGCGCTATAATAATAGCCACAGCAACCGCCAGAAACCCTCTAAGCAGCATAATAGGCCACAGATCCACAATTTGCATCCAAGAGATCATCATCATCATGAAGGGGACATTGAATTTGGTGACAAAGGAATGCCACCACCGATTATAAGAACCCAACAAGAACATGGTCATGGTCATGGTCATGAAGGGGACATTGAATTTGAGGGTGACATAAGAATGCCACCACCAATTATAAGAACCAAAGAACGTGGTCATGGTCATCATGGTCATGGAGCAGCTGGCACAGGAGGACCCCAGTTACATCATGTTAATGATACCATGAAAGATTTTAATTTGAGACCTGGCCATGGAGAAGTGCTTAGAGCAGGTGCATGA
Predicted protein sequences of Glyma08g39440
>Glyma08g39440.1   sequence type=predicted peptide   gene model=Glyma08g39440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLQAQPQQQPQQPVQVYPTNQPPSSSHHSNGSFGAVFIVLAIILVISVVACFLGRLCNKRYNNSHSNRQKPSKQHNRPQIHNLHPRDHHHHEGDIEFGDKGMPPPIIRTQQEHGHGHGHEGDIEFEGDIRMPPPIIRTKERGHGHHGHGAAGTGGPQLHHVNDTMKDFNLRPGHGEVLRAGA*






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