SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G60420 | AT | Annotation by Michelle Graham. TAIR10: DC1 domain-containing protein | chr1:22261978-22264243 FORWARD LENGTH=578 | SoyBase | E_val: 0 | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0010183 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube guidance | SoyBase | N/A | ISS |
| GO:0045454 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0080092 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of pollen tube growth | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0016209 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: antioxidant activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0047134 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein-disulfide reductase activity | SoyBase | N/A | ISS |
| KOG2501 | KOG | Thioredoxin, nucleoredoxin and related proteins | JGI | ISS | |
| PTHR13871 | Panther | THIOREDOXIN | JGI | ISS | |
| PTHR13871:SF2 | Panther | THIOREDOXIN - RELATED | JGI | ISS | |
| PF00578 | PFAM | AhpC/TSA family | JGI | ISS | |
| PF07649 | PFAM | C1-like domain | JGI | ISS | |
| PF08534 | PFAM | Redoxin | JGI | ISS | |
| UniRef100_B9SHA0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleoredoxin, putative n=1 Tax=Ricinus communis RepID=B9SHA0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KXE7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXE7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g39390 not represented in the dataset |
Glyma08g39390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g285900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g39390.1 sequence type=CDS gene model=Glyma08g39390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGATTCTGCAGATGTCACCCACGATGTTGTGTCCCTCCTCTCTTCTCCTCAAAGGGACTTTCTTCTTCGAAACAACGGCGATCAGGTTAAAATTGACAGCTTGAAGGGTAAGAAACTTGGTTTGTATTTTTCGGCATCCTGGTGTGGTCCATGTCAAACATTTACGCCAACTTTGGTGGATGTGTACAATGAGGTTGCAAAAAAAGGTGACTTCCAGATCGTTTTCATTACGGCTGATGAAGATGATGAGTCCTTTAACGGTTACTTTTCCAAGATGCCATGGCTTGCAATCCCATTTTCTGATTCAGACACACGCAGCCGCCTTGATGAATTGTTTCATGTGAGGGGGATTCCCCATCTTGCATTACTTGATGAAGCTGGCAATGTTGTCACTGAAGATGGAGTTGATGTTATACGCGAATACGGTGTTGAAGGATACCCGTTTACATCAGCAAGGATCCAAGAGTTGAGAGATCAAGAAGAGGAAGCTAGGAGGAACCAGTCCGTGAGATCTCTCTTGGTCTCTCCATCTCGGGACTTCGTAATATCATCTGATGGAAAGAAAACACTTGTCTCTGAGCTTGAGGGCAAGACAGTTGGTCTGTATTTCTGCGTGAAGTCATTCGGATCATGCAGTGACTTTACCCCAAAGCTTGTGGAGGTTTATGAGAAGCTGAAGGCCCAGGGGGAGAACTTTGAGGTTGTGCTGATACCCCTAGATGATGATGAAGAGTCATTCAAGGAACTATTAGAAAGTGTGCCTTGGTTATCCTTGCCTTTCAAGGACAAAATCTGTGGGAAGCTAGCTCGGTACTTCGAGCTTTCAACCCTCCCCACTTTGGTTATTATTGGACCAGATGGGAAAACTCTTCATTCTAATGTTGCTGAGGCAATTGAGGATCATGGGGTTGCTGCATACCCATTCACCCCTGAAAAGTTTGCTGAGCTTGATGAAATACTGAAGGCCAAAGAGGCAGCTCAAACCCTTGAGTCAATTTTGGTGTCTGACGATCAAGATTTTGTCATTGGGAAAGATGGGGTGAAGATTCCAGTGTCAGAATTGAAGGGGAAGGTTGTCCTCCTCTACTTCTCAGCTCACTGGTGTCCTCCATGCCGTGCATTCCTTCCAAAACTTATTGATGCATATAATAAGATTAAGGAAAAGGGCAATGCATTAGAAGTTGTTTTCATCTCAAGTGACAGAGATCAAACCTCCTTTGATGAATTCTTTGCGGGAATGCCATGGTTGGCACTTCCCTTTGGGGACTCGAGGAAGAAATTCCTGAGTCGCAAATTCAGGGTATCTGGCATCCCCATGCTTGTGGCCATTGCATCAAGTGGTCAGACATTGACAACAAAAGCTCGAGATCTGGTTTCACTCTATGGAGCAGATGCATATCCTTTCACCGAGGAGAGAATAAAAGAAATAGAGACAGAACAAGAAGAGACTGCAAAGGGGTGGCCGGAGAAGCTGAAGCATGAATTACATGAGCATGAGCTTGTGTTGACGCGCCGCAGGGTGTATTACTGTGATGCTTGCAATGAAGAGGGACATATATGGTCCTACTACTGTGGAGATTGTGACTTTGATCTCCATCCAAAATGTGCATTGGAAAAGGAGGACAAAGAAGGAAGCAAAGATGATGCCAAGGAAGAAAAGTCCAAAGATGAATGGGTTTGTGATGGAGAAGTCTGCAAAAAAGCCTAA
>Glyma08g39390.1 sequence type=predicted peptide gene model=Glyma08g39390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADSADVTHDVVSLLSSPQRDFLLRNNGDQVKIDSLKGKKLGLYFSASWCGPCQTFTPTLVDVYNEVAKKGDFQIVFITADEDDESFNGYFSKMPWLAIPFSDSDTRSRLDELFHVRGIPHLALLDEAGNVVTEDGVDVIREYGVEGYPFTSARIQELRDQEEEARRNQSVRSLLVSPSRDFVISSDGKKTLVSELEGKTVGLYFCVKSFGSCSDFTPKLVEVYEKLKAQGENFEVVLIPLDDDEESFKELLESVPWLSLPFKDKICGKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEDHGVAAYPFTPEKFAELDEILKAKEAAQTLESILVSDDQDFVIGKDGVKIPVSELKGKVVLLYFSAHWCPPCRAFLPKLIDAYNKIKEKGNALEVVFISSDRDQTSFDEFFAGMPWLALPFGDSRKKFLSRKFRVSGIPMLVAIASSGQTLTTKARDLVSLYGADAYPFTEERIKEIETEQEETAKGWPEKLKHELHEHELVLTRRRVYYCDACNEEGHIWSYYCGDCDFDLHPKCALEKEDKEGSKDDAKEEKSKDEWVCDGEVCKKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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