Glyma08g39370 - SoyBase

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Report for Sequence Feature Glyma08g39370

Feature Type:	gene_model
Chromosome:	Gm08
Start:	38915525
stop:	38923741
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g39370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32180	AT	Annotation by Michelle Graham. TAIR10: pantothenate kinase 2 \| chr4:15538340-15543715 REVERSE LENGTH=783	SoyBase	E_val: 4.00E-175	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0015937	GO-bp	Annotation by Michelle Graham. GO Biological Process: coenzyme A biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004594	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pantothenate kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG2201	KOG	Pantothenate kinase PanK and related proteins	JGI		ISS
PTHR12280	Panther	PANTOTHENATE KINASE	JGI		ISS
PTHR12280:SF10	Panther	PANTOTHENATE KINASE 4	JGI		ISS
PF03630	PFAM	Fumble	JGI		ISS
UniRef100_B9SH97	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pantothenate kinase, putative n=1 Tax=Ricinus communis RepID=B9SH97_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KXE5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXE5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g39370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g39370

Paralog	Evidence	Comments
Glyma18g19360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g39370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g285700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g39370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g39370

Limit To All Plant Sequences

>Glyma08g39370.1   sequence type=CDS   gene model=Glyma08g39370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCTCAGAGAGGGTCAAACTCAACCAATCTTGGATCCTAACCAACCATCTCATGTGTATCATCTGGCTTTGGATATTGGAGGATCTCTCGCCAAGTTAGTATACTTCACAAAAGATGATGATCATTTGGTTGATGGCGAGGAAGGGATATCTCATAGAAAGGCTTTGGAGAAATCCGACAGCAGTAAGCAATATCCTGTTCTTAATGGGAAGCTCAATTTTAAGAAGTTTGAAACAAGCAGGATAAATGATTGCATAGAGTTTATCAAGTCCATGAAACTTCATATTGGAGGTAGTCAGCCACAAGAAAATCCTGGAAGTCAGCCAATAGCTATTAAGGCCACAGGTGGTGGTGCATACAAATATCCAGACCTTTTCAAGGAAAGACTAGGAATCATTCTTGACAAGGAAGATGAAATGGATTGTCTTGTTGCAGGAGCAAATTTTCTTCTTGAGGTGGTCCACCAGGAAGCATTTACCTACATGGGTGATCAAAAGCAATTTGTACAGATTGACCCGAATGATCTGTATCCCTATCTTCTTGTTAATATTGGGTCTGGTGTTGGCATGATTAAGGTGGAAGGAGAGGGAAAATTTGAGCGAGTTAGTGGAACAAGTATAGGCGGAGGCACTTTCTGGGGTTTAGGAAAGCTTTTAACCAAGTGCAAGAGTTTTGATGAGCTGCTGGAATTAAGTTATCGGGGGAACAATAGAGCGGTAGATATGCTTGTTGGAGATATTTATGGTGGAATGGACTATTCTAAGATAGGTCTTTCATCCACTGCAATAGCCTCTAGTTTTGGAAAGGCAATTTCTGATAATAAGGAGCGTGGAGACTACAAACCTGAAGATATTGCTCGATCTCTTCTAAGAATGATCTCAAATAATATTGGACAGATCTCTTACTTGAATGCCCTTCGCTTTGGGCTGAAGAGGATTTTTTTTGGTGGATTTTTTATTCGGAGGCATCCTTTTACTATGGACACATTATCTGTTGCTGTTAATTTCTGGTCTAAAGGTGAGGCTAAGGCAATGTTTTTGCGGCATGAAGGGTTTCTAGGAGGTGTAGGCGCTTTCATGAGTTCTGACAAACATGGCCTCAAGGAATTATTGGCCAATCAAGTGGTGCAAAGAAGTCCCAGCAAGTTATCCTTTGCCGTGGATAAAACATTGCATGGTTCACCAGATGGAGAGTTTAATGGAGATGAAAGTATAGAGTGCAGTGTATATGCAGCTTAG

Predicted protein sequences of Glyma08g39370

Limit To All Plant Sequences

>Glyma08g39370.1   sequence type=predicted peptide   gene model=Glyma08g39370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLREGQTQPILDPNQPSHVYHLALDIGGSLAKLVYFTKDDDHLVDGEEGISHRKALEKSDSSKQYPVLNGKLNFKKFETSRINDCIEFIKSMKLHIGGSQPQENPGSQPIAIKATGGGAYKYPDLFKERLGIILDKEDEMDCLVAGANFLLEVVHQEAFTYMGDQKQFVQIDPNDLYPYLLVNIGSGVGMIKVEGEGKFERVSGTSIGGGTFWGLGKLLTKCKSFDELLELSYRGNNRAVDMLVGDIYGGMDYSKIGLSSTAIASSFGKAISDNKERGDYKPEDIARSLLRMISNNIGQISYLNALRFGLKRIFFGGFFIRRHPFTMDTLSVAVNFWSKGEAKAMFLRHEGFLGGVGAFMSSDKHGLKELLANQVVQRSPSKLSFAVDKTLHGSPDGEFNGDESIECSVYAA*

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