Glyma08g39350 - SoyBase

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Report for Sequence Feature Glyma08g39350

Feature Type:	gene_model
Chromosome:	Gm08
Start:	38887357
stop:	38892216
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g39350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G60550	AT	Annotation by Michelle Graham. TAIR10: enoyl-CoA hydratase/isomerase D \| chr1:22305988-22308092 REVERSE LENGTH=337	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009234	GO-bp	Annotation by Michelle Graham. GO Biological Process: menaquinone biosynthetic process	SoyBase	N/A	ISS
GO:0042371	GO-bp	Annotation by Michelle Graham. GO Biological Process: vitamin K biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008935	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	SoyBase	N/A	ISS
KOG1680	KOG	Enoyl-CoA hydratase	JGI		ISS
PTHR11941	Panther	ENOYL-COA HYDRATASE-RELATED	JGI		ISS
PF00378	PFAM	Enoyl-CoA hydratase/isomerase family	JGI		ISS
UniRef100_C6TE57	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TE57_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8GYN9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal n=1 Tax=Arabidopsis thaliana RepID=MENB_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g39350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g39350

Paralog	Evidence	Comments
Glyma18g19503	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g39350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g285500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g39350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g39350

Limit To All Plant Sequences

>Glyma08g39350.1   sequence type=CDS   gene model=Glyma08g39350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGAACAACAACAACCACCACCTTGAAACCGCCACCAGAAGGCTTGCCTCTGTGACCAACCACCTCACTCCTTCTTCTTATCACAACGCACCCGGCGAACTCGCCCCGTGCCTCACTTCCGGTGGGAACAACAGCTTCCGCCGCGTCCACGGAGAAGTTCCATCCCACGACGTCGTTTGGAGGATCGTCGCCTCCGACCACGACAACTCCGGCAAGGACTTCACCGACATTGTCTACGAGAAGGCCGTCGGGGAAGGAATAGCCAAGATAAGTATTAATAGGCCAGAGAGAAGGAATGCGTTCCGACCCCACACGGTGAAGGAGCTTATGCGTGCTTTCACTGATGCCAGGGATGATAGCTCTATTGGGGTCGTCATTCTCACTGGCAAGGGAACCGAAGCATTTTGTAGTGGTGGTGACCAGGCTTTGAGGACTAACGATGGCTATTCTGATAATGGAAGTTTCAGTAGCCTTAATGTGTTAGACTTGCAGGTGCAGATACGCCGCCTCCCTAAACCAGTGATTGCAATGGTAGCAGGTTATGCTGTTGGAGGAGGGCATGTATTGCATATGGTCTGTGATCTAACTATTGCAGCAGATAATGCTATCTTTGGCCAAACTGGTCCCAAGGTTGGAAGCTTTGATGCTGGTTATGGAAGTTCTATCATGTCCCGTTTGGTAGGTCCAAAAAAAGCACGTGAAATGTGGTTTCTCACAAGGTTCTATGATGCTGTTGAAGCAGAGAAAATGGGCCTTGTCAACACTGTTGTACCACTTGAGAATTTAGAGAAGGAAACGATAAAATGGTGTCGGGAGATACTGAGGAACAGTCCAACTGCTATTCGGGTACTCAAGTCAGCTCTTAATGCAGTGGATGATGGACATTCCGGACTTCAGGAAATTGGTGGAAATGCAACACTGATATACTATGGCACTGAGGAAGCTAAAGAGGGCAAGACTGCATATATGCAACGTAGACGGCCTGATTTTTCTAAGTTCAATCGGCGACCTTAA

Predicted protein sequences of Glyma08g39350

Limit To All Plant Sequences

>Glyma08g39350.1   sequence type=predicted peptide   gene model=Glyma08g39350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAENNNNHHLETATRRLASVTNHLTPSSYHNAPGELAPCLTSGGNNSFRRVHGEVPSHDVVWRIVASDHDNSGKDFTDIVYEKAVGEGIAKISINRPERRNAFRPHTVKELMRAFTDARDDSSIGVVILTGKGTEAFCSGGDQALRTNDGYSDNGSFSSLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYDAVEAEKMGLVNTVVPLENLEKETIKWCREILRNSPTAIRVLKSALNAVDDGHSGLQEIGGNATLIYYGTEEAKEGKTAYMQRRRPDFSKFNRRP*

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