Glyma08g39315 - SoyBase

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Report for Sequence Feature Glyma08g39315

Feature Type:	gene_model
Chromosome:	Gm08
Start:	38827974
stop:	38835359
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g39315

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G23460	AT	Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein \| chr1:8327382-8329622 FORWARD LENGTH=460	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0004650	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF00295	PFAM	Glycosyl hydrolases family 28	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_F6HHV9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=F6HHV9_VITVI	SoyBase	E_val: 0	ISS
UniRef100_Q9LQD1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F28C11.9 n=1 Tax=Arabidopsis thaliana RepID=Q9LQD1_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g39315

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g39315 not represented in the dataset	Glyma08g39315 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g39315 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g285300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g39315

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g39315

Limit To All Plant Sequences

>Glyma08g39315.1   sequence type=CDS   gene model=Glyma08g39315   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAAGCCTCTACTCCACTCCTTCATCAGAGCCATAACAACTCTTACACCAATACCTCCACACACTTTTCTTCACCTTCACAACCCCAGCGACAGTGTCATCTACCTCAAGAACCGCGAAATCGACGCTTTCATAAAACTTAGAAACCTGAACGCTGCACTCGCAGTGTTCCACACCACGCCACTGCGCGACACTGTCACCTACAACTTAATTATTTCCGCGTTCCGAAACCAACCAAATCACGCTCTTCGTTTCTACGCTGAAATGGGTTTGCGTGGAATAAGAGAAAGCCCAACCACGTTAACCTCTGTTATAGCGGTTTGCACCAACGCTATGTTTTTCAAAGAGGGTGTTCAGGTGCATTGCAGGGTGATCAAGTTCGGGTTTACATGCAACGTGTTCGTGGGTGGTGCACTTGTTGGGTTTTACGCGCACGTGGGGGAATGTGGGGTGGCACTGGACTTGTTTGATGAGTTGCCAGAGAGAAACTTGGCTGTCTGGAACGTCATGCTGCGTGGGTTGTGTGAACTGGGTCGTGTAAATGTTGAAGACTTGATGGGGTTTTATTACCCTCGGATGCTTTTTGAAGGTGTGCAGCCAAATGGGGTTACGTTTTGTTATTTGCTTAGAGGCTGTGGTAATCAGAGACGGTTGGAGGAAGGGAAGAAGATTCAAGGGTGCGTTTTGAAGATGGGTTTGGTGGAATCGAGTGTTTTTGTTGCCAATGCTCTGGTGGATTTTTACTCTGCGTGTGGGTGTTTTGTTGGTGCAAGGAGGTGTTTTGAGGACATAGAAAACGAGGATGTTATTTCGTGGAACTCGTTGGTTTCGGTTTATGCGGAGAATAATATGTTAATTGAGGCTTTGGAGGTGTTTTGTGTCATGCAAGTGTGGAGGAAAAGGCCATCAATTCGTTCTTTGGTGGGTTTGTTGAATTTGTGCAGTAGAAGTGGAGAGCTTTGTTTGGGGAAGCAGGTTCATTGTCATGTGATGAAGTTTGGTTTTGATGAAGGGAGTGTGCATGTTCAATCTGCTTTGATTGATATGTATGGAAAGTGCATGGACATTGAGAGTTCTGTGAATGTATTTGAATGCCTTCCCAAGAGAACTTTGGATTGTTTCAACTCATTGATGACCTCTTTGTCTTATTGTGATGCGGTTGACGATGTGGTTGAATTGTTTGGTTTGATGTTTGACGAGGGTCTTGTGCCGGATGGAGTTACCTTATCAACCACACTGAGGGCATTGTCAGTGTCCACTTTAGCAAGTTTTACGAGTTCCCAGTTACTACATTGTTATGCATTAAAATCTGGACTTGGAGGAGATGCTGCAGTTGCATGTTCCCTCGTGGATTCATATTCAAGATGGGGCCATGTGGAGCTTTCTCGTCGAATTTTTGAGAGTCTTCCTTCTCCAAATGCTATTTGCTTCACATCCATGATCAATGCATATGCCCGAAATGGAGCGGGGAAAGAAGGAATTGCAGTGCTTCAAGCTATGATTGAGAGGGGACTAAAGCCTGATGATGTTACCTTATTATGTGCACTAAATGGTTGTAACCACACAGGATTAGTTGAGGAAGGAAGATTAGTCTTTGAATCGATGAAATCTCTTCATGGGGTCGATCCAGATCACCGCCATTTTTCATGCATGGTGGATCTCTTTTGCCGTGCAGGACTTCTACATGAAGCTGAAGAGTTGCTGCTACAGGCACCGGGAAAAGGAGACTGTTTTATGTGGAGCTCTTTGCTGAGAAGTTGCAGGGTCCACAAGAATGAAGAGGTTGGAACAAGAGCAGCACAAGTGTTAGTTGAGCTAGATCCAGATGACCCTGCAGTGTGGTTGCAAGCTTCAATTTTTTATGCTGAAATAGGGAATTTTGATGCATCAAGGCAAATCAGAGAGGTTGCTCTATCAAGGAAGATGACTAGGGAAATTGGTCATACAGCTCATGGAGTTGCAGGAAGCATGATGTGTGACAACATTGGCATGCTTGAAGAACTTAAAAGCCTTGAGGCCCTGGACATAGAAGAAGAAAATGAGGTTGGACTTTCTGACATCCCTTCATGGAGAAGTGAGCATGGTGGAAAAGTTCTGGTGAATATTGATAGCTTTGGTGCTGCTGGAGATGGAGAATCTGATGATACTGAGGCTTTACAAAAAGCATGGGGAGTTGCATGCTCTACACCAAAATCTGTTTTGTTAATTCCTCAAGGACGCCGTTACCTAGTTAATGCAACAAAATTCAGAGGGCCTTGTGAAGACAAGCTCATCATCCAGATTGATGGTACTTTGGTTGCACCAGATGAGCCTAAGAACTGGGATCCAAAACTACCACGGGTTTGGCTTGATTTTTCCAAATTGAACAAAACTATTTTCCAAGGTTCTGGAGTTATTGATGGCTCAGGAAGCAAATGGTGGGCGGCATCTTGCAAAAAGAACAAGTCCAATCCTTGCAAAGGTGCACCAACAGCATTTACAATTGATACAAGTTCATCCATAAGGGTGAAAGGACTAACAATCCAGAATAGCCAACAGATGCATTTTACTATATCACGATGTGATTCTGTTAGAATTACTGGCGTGAAAGTGTCAGCACCTGGAGACAGCCCAAACACTGATGGAATTCATATTAGTGAATCAACAAATGTCATAATCCAAGACAGCAAAATTGGAACAGGGGATGATTGCATATCAATTGTCAATGCTAGCTCTAATATCAAAATGAAGAGAATTTATTGTGGACCAGGACATGGAATCAGCATTGGAAGTCTAGGGAAAGACAACTCAACAGGCATAGTCACGAAAGTGATTTTGGATACAGCAGTTCTTAGGGAGACTACCAACGGTCTCAGAATTAAGACTTGGCAGGGAGGTTCTGGATATGTTCGAGGGGTGCGTTTTCAGAATGTGAGGGTGGAAAATGTATCCAACCCCATTATTATAGACCAATTTTACTGTGATTCTCCAACCAATTGTGAAAATCAGGCATCAGCAGTGGAGATAAGCGAGGTGATGTACCAGAACATAAGTGGCACTACAATGAGTGCTAAGGCCATTAAATTTGACTGCAGTGACTCAGTCCCATGCAGCAAACTAGTCCTTAGCAACGTTGACTTAGAGAAACAAGATGGCTCTGTTGAAACATATTGCCACTCAGCACAAGGCTTTCCCTATGGTGTGGTTCACCCTTCTGCTGATTGCCTTAGTTCAAGTGACAAAACATCTCAAATTGAAGAGTCAACTATAGAGGAAGAAGATATTCGTCACACTGAACTATAA

Predicted protein sequences of Glyma08g39315

Limit To All Plant Sequences

>Glyma08g39315.1   sequence type=predicted peptide   gene model=Glyma08g39315   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQKPLLHSFIRAITTLTPIPPHTFLHLHNPSDSVIYLKNREIDAFIKLRNLNAALAVFHTTPLRDTVTYNLIISAFRNQPNHALRFYAEMGLRGIRESPTTLTSVIAVCTNAMFFKEGVQVHCRVIKFGFTCNVFVGGALVGFYAHVGECGVALDLFDELPERNLAVWNVMLRGLCELGRVNVEDLMGFYYPRMLFEGVQPNGVTFCYLLRGCGNQRRLEEGKKIQGCVLKMGLVESSVFVANALVDFYSACGCFVGARRCFEDIENEDVISWNSLVSVYAENNMLIEALEVFCVMQVWRKRPSIRSLVGLLNLCSRSGELCLGKQVHCHVMKFGFDEGSVHVQSALIDMYGKCMDIESSVNVFECLPKRTLDCFNSLMTSLSYCDAVDDVVELFGLMFDEGLVPDGVTLSTTLRALSVSTLASFTSSQLLHCYALKSGLGGDAAVACSLVDSYSRWGHVELSRRIFESLPSPNAICFTSMINAYARNGAGKEGIAVLQAMIERGLKPDDVTLLCALNGCNHTGLVEEGRLVFESMKSLHGVDPDHRHFSCMVDLFCRAGLLHEAEELLLQAPGKGDCFMWSSLLRSCRVHKNEEVGTRAAQVLVELDPDDPAVWLQASIFYAEIGNFDASRQIREVALSRKMTREIGHTAHGVAGSMMCDNIGMLEELKSLEALDIEEENEVGLSDIPSWRSEHGGKVLVNIDSFGAAGDGESDDTEALQKAWGVACSTPKSVLLIPQGRRYLVNATKFRGPCEDKLIIQIDGTLVAPDEPKNWDPKLPRVWLDFSKLNKTIFQGSGVIDGSGSKWWAASCKKNKSNPCKGAPTAFTIDTSSSIRVKGLTIQNSQQMHFTISRCDSVRITGVKVSAPGDSPNTDGIHISESTNVIIQDSKIGTGDDCISIVNASSNIKMKRIYCGPGHGISIGSLGKDNSTGIVTKVILDTAVLRETTNGLRIKTWQGGSGYVRGVRFQNVRVENVSNPIIIDQFYCDSPTNCENQASAVEISEVMYQNISGTTMSAKAIKFDCSDSVPCSKLVLSNVDLEKQDGSVETYCHSAQGFPYGVVHPSADCLSSSDKTSQIEESTIEEEDIRHTEL*

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