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Report for Sequence Feature Glyma08g39290

Feature Type:gene_model
Chromosome:Gm08
Start:38798476
stop:38801718
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g39290
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G23420AT Annotation by Michelle Graham. TAIR10: Plant-specific transcription factor YABBY family protein | chr1:8317423-8319104 FORWARD LENGTH=231 SoyBaseE_val: 3.00E-73ISS
GO:0006333GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly SoyBaseN/AISS
GO:0009944GO-bp Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF04690PFAM YABBY protein JGI ISS
UniRef100_G7K086UniRef Annotation by Michelle Graham. Most informative UniRef hit: Axial regulator YABBY n=1 Tax=Medicago truncatula RepID=G7K086_MEDTR SoyBaseE_val: 1.00E-116ISS
UniRef100_UPI000233853AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233853A related cluster n=1 Tax=unknown RepID=UPI000233853A SoyBaseE_val: 4.00E-162ISS

Expression Patterns of Glyma08g39290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g39290
ParalogEvidenceComments
Glyma18g19720 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g39290 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g285200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g39290
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g39290
>Glyma08g39290.2   sequence type=CDS   gene model=Glyma08g39290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAACACTGAACCACCTCTTTGATCTTCCAGAACAGATATGCTACGTACAATGTGGATTCTGTACAACAATACTAATGGTGAGTGTTCCATGCAGCATTTTGTCAACGGTGGTGACAGTGAGATGCGGCCACTGCACAAGCCTCCTCTCAGTCAACATGAAGAAAGCTTCCTTTGTCCCTTTCCACCTTCTTGCTTCCCTTACTCATCTTGAGCCAAAAGAAGGTGCTTCAGATGATGGTGCAAACAAGAGTTTGAACAGCTATAATAATGCATCCATAATAACCACCAATTCGGACTGTGAGGAAGAGAACGTGACTCAAATTTCCAATGTCGTGCATAAACCTCCAGAGAAGAGACAGAGAACACCATCTGCATATAACCGCTTCATCAAAGAAGAGATTAAAAGGCTTAAGTCTGAAAACCCTAACATGGCCCACAAGGAGGCTTTCAGTACTGCGGCAAAAAATTGGGCCAATTTTCCCCCATCACAGTGTGATGGAGAAGCCGACAGCTGTAACGGGACAGAGCAACTTGGGGATCTGGACTCCCATGAAGAGCCTCGTGATGCTATTGAGGTTCATAAAGAAGGCCAAGGTTTCCGTGGAAGAAAGGCTCCAAGGAATTCTATCTGGGAAAGGGCACCTTTTGAATGA
Predicted protein sequences of Glyma08g39290
>Glyma08g39290.2   sequence type=predicted peptide   gene model=Glyma08g39290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSILSTVVTVRCGHCTSLLSVNMKKASFVPFHLLASLTHLEPKEGASDDGANKSLNSYNNASIITTNSDCEEENVTQISNVVHKPPEKRQRTPSAYNRFIKEEIKRLKSENPNMAHKEAFSTAAKNWANFPPSQCDGEADSCNGTEQLGDLDSHEEPRDAIEVHKEGQGFRGRKAPRNSIWERAPFE*






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