Glyma08g39261 - SoyBase

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Report for Sequence Feature Glyma08g39261

Feature Type:	gene_model
Chromosome:	Gm08
Start:	38758624
stop:	38762879
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g39261

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62960	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr5:25269444-25271533 FORWARD LENGTH=347	SoyBase	E_val: 2.00E-115	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KXD3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KXD3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8H101	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT1G10660 protein n=1 Tax=Arabidopsis thaliana RepID=Q8H101_ARATH	SoyBase	E_val: 5.00E-112	ISS

Expression Patterns of Glyma08g39261

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g39261 not represented in the dataset	Glyma08g39261 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g39261 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g284900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g39261

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g39261

Limit To All Plant Sequences

>Glyma08g39261.2   sequence type=transcript   gene model=Glyma08g39261   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTACACCTTTCTTTCTTCCCATCCGGAATCACCCCTATTTTATTTTATTTTTTTCTTTCTTCATTTGGATGAAGCAATGAACTTTTTGGACTTTGGGGTGAAGCAATCTCAATATTGTTATTGGAACTGAGGGCTATCATTGAAAAGGGTAGTCCAATGCATGATTCTCCCACCATTGTGCATAGTGTTTCAAGAAACACATCAAGAAGAAACATAAAATTCTAAAGCTAGCACACATAACTCATGAGTTTCTTCACAGAGTCCTCTAGCCATACATGGCAACCAACCATAACTTCAGACTCTACTACCCTAAGTTATTGGTTGAATTGGAGGTTCTTCTTCTGTGCACTATGGATTTTAGCCTCCATGGCTCTAGCATCTTTTTTAATATTCAAATATGAAGGATTCAACAAATCAAGATCGAATAGTGGAGAAAATCAGGGGGAGGAAGAAGCTGGATTGCTATATGAGGATGAAGCATGGAACACCTGTCTTAAAGGAATTGATCCTTCATGGCTCCTTATTTATAGAATAATTTGTTTTGTTGTGCTTTTGGCTTTGATCATTGCAAGTGTGGCTGCAGATGGAGCAGGCATATTTTACTTCTATACTCAATGGACCTTTACATTGGTCACTATTTACTTTGGGTTTGGATCATATTTCTCTTTATATGGATGTTCCCTAAAACAAAATAAATATGGGAGCAGCACGGTCAATGGCACTTCTTTAGATCCAGAACTAGGCACTTATATAGTTGATGCTCGGAAAACAGCTGGTTTATGGGGTTACATTTTTCAAATAATTTTTCAGACTTGTGCAGGTGCTGTAGTGCTAACTGACTCTGTGTTCTGGTTCATCCTTTATCCATTTCTGATGTCCAAAGATTACAGTGTCGATTTTTTGATTTTTTGTATGCACTCAATTAATGCTCTTTTCCTCCTCGGTGACACATCATTGAATTGCATGAGATTTCCAATGTTTCGATTTGCATATTTTGTCTTGTGGACGTCTACTTTTGTCATTTTTCAGTGGATCATCCATGTTTGTGTTTCACTTTGGTGGCCTTATCCTTTCCTTGATTTATCATCCTCGTATGCACCCTTATGGTACTTGGCTGTGGCTTTGATGCACTTTCCATGCTACGGCGTCTTTGCTTTAATAGTAAGGATGAAACACTTGTGGTTATCAAAATCGTTTCCTGGTTCTTCCCGTTTTGTACGGTGACAACACTTTCCACGAAATTCACCTTTTACTTAACTTAGCATAAAGTGATTTTGAAGATCAGAATTAGATAACTCCAGTTGTTATGTAAATTCATCCCTTCCCCACTTAAAACATATTATGTGCATGTTTGATTTGAATTCTGTACCATGTCAAATTAGAAGCAGCTTTATATAGCTTCTCTTGTCTCAGTTTTTTTTTTTCATGTCAAATTGGAATTTTATGTAAAAGCTACTACTATTCGTTGCTTCAAGATTGACATGAATTTTAT

Coding sequences of Glyma08g39261

Limit To All Plant Sequences

>Glyma08g39261.1   sequence type=CDS   gene model=Glyma08g39261   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTCTTCACAGAGTCCTCTAGCCATACATGGCAACCAACCATAACTTCAGACTCTACTACCCTAAGTTATTGGTTGAATTGGAGGTTCTTCTTCTGTGCACTATGGATTTTAGCCTCCATGGCTCTAGCATCTTTTTTAATATTCAAATATGAAGGATTCAACAAATCAAGATCGAATAGTGGAGAAAATCAGGGGGAGGAAGAAGCTGGATTGCTATATGAGGATGAAGCATGGAACACCTGTCTTAAAGGAATTGATCCTTCATGGCTCCTTATTTATAGAATAATTTGTTTTGTTGTGCTTTTGGCTTTGATCATTGCAAGTGTGGCTGCAGATGGAGCAGGCATATTTTACTTCTATACTCAATGGACCTTTACATTGGTCACTATTTACTTTGGGTTTGGATCATATTTCTCTTTATATGGATGTTCCCTAAAACAAAATAAATATGGGAGCAGCACGGTCAATGGCACTTCTTTAGATCCAGAACTAGGCACTTATATAGTTGATGCTCGGAAAACAGCTGGTTTATGGGGTTACATTTTTCAAATAATTTTTCAGACTTGTGCAGGTGCTGTAGTGCTAACTGACTCTGTGTTCTGGTTCATCCTTTATCCATTTCTGATGTCCAAAGATTACAGTGTCGATTTTTTGATTTTTTGTATGCACTCAATTAATGCTCTTTTCCTCCTCGGTGACACATCATTGAATTGCATGAGATTTCCAATGTTTCGATTTGCATATTTTGTCTTGTGGACGTCTACTTTTGTCATTTTTCAGTGGATCATCCATGTTTGTGTTTCACTTTGGTGGCCTTATCCTTTCCTTGATTTATCATCCTCGTATGCACCCTTATGGTACTTGGCTGTGGCTTTGATGCACTTTCCATGCTACGGCGTCTTTGCTTTAATAGTAAGGATGAAACACTTGTGGTTATCAAAATCGTTTCCTGGTTCTTCCCGTTTTGTACGGTGA

>Glyma08g39261.2   sequence type=CDS   gene model=Glyma08g39261   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTCTTCACAGAGTCCTCTAGCCATACATGGCAACCAACCATAACTTCAGACTCTACTACCCTAAGTTATTGGTTGAATTGGAGGTTCTTCTTCTGTGCACTATGGATTTTAGCCTCCATGGCTCTAGCATCTTTTTTAATATTCAAATATGAAGGATTCAACAAATCAAGATCGAATAGTGGAGAAAATCAGGGGGAGGAAGAAGCTGGATTGCTATATGAGGATGAAGCATGGAACACCTGTCTTAAAGGAATTGATCCTTCATGGCTCCTTATTTATAGAATAATTTGTTTTGTTGTGCTTTTGGCTTTGATCATTGCAAGTGTGGCTGCAGATGGAGCAGGCATATTTTACTTCTATACTCAATGGACCTTTACATTGGTCACTATTTACTTTGGGTTTGGATCATATTTCTCTTTATATGGATGTTCCCTAAAACAAAATAAATATGGGAGCAGCACGGTCAATGGCACTTCTTTAGATCCAGAACTAGGCACTTATATAGTTGATGCTCGGAAAACAGCTGGTTTATGGGGTTACATTTTTCAAATAATTTTTCAGACTTGTGCAGGTGCTGTAGTGCTAACTGACTCTGTGTTCTGGTTCATCCTTTATCCATTTCTGATGTCCAAAGATTACAGTGTCGATTTTTTGATTTTTTGTATGCACTCAATTAATGCTCTTTTCCTCCTCGGTGACACATCATTGAATTGCATGAGATTTCCAATGTTTCGATTTGCATATTTTGTCTTGTGGACGTCTACTTTTGTCATTTTTCAGTGGATCATCCATGTTTGTGTTTCACTTTGGTGGCCTTATCCTTTCCTTGATTTATCATCCTCGTATGCACCCTTATGGTACTTGGCTGTGGCTTTGATGCACTTTCCATGCTACGGCGTCTTTGCTTTAATAGTAAGGATGAAACACTTGTGGTTATCAAAATCGTTTCCTGGTTCTTCCCGTTTTGTACGGTGA

Predicted protein sequences of Glyma08g39261

Limit To All Plant Sequences

>Glyma08g39261.1   sequence type=predicted peptide   gene model=Glyma08g39261   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFFTESSSHTWQPTITSDSTTLSYWLNWRFFFCALWILASMALASFLIFKYEGFNKSRSNSGENQGEEEAGLLYEDEAWNTCLKGIDPSWLLIYRIICFVVLLALIIASVAADGAGIFYFYTQWTFTLVTIYFGFGSYFSLYGCSLKQNKYGSSTVNGTSLDPELGTYIVDARKTAGLWGYIFQIIFQTCAGAVVLTDSVFWFILYPFLMSKDYSVDFLIFCMHSINALFLLGDTSLNCMRFPMFRFAYFVLWTSTFVIFQWIIHVCVSLWWPYPFLDLSSSYAPLWYLAVALMHFPCYGVFALIVRMKHLWLSKSFPGSSRFVR*

>Glyma08g39261.2   sequence type=predicted peptide   gene model=Glyma08g39261   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFFTESSSHTWQPTITSDSTTLSYWLNWRFFFCALWILASMALASFLIFKYEGFNKSRSNSGENQGEEEAGLLYEDEAWNTCLKGIDPSWLLIYRIICFVVLLALIIASVAADGAGIFYFYTQWTFTLVTIYFGFGSYFSLYGCSLKQNKYGSSTVNGTSLDPELGTYIVDARKTAGLWGYIFQIIFQTCAGAVVLTDSVFWFILYPFLMSKDYSVDFLIFCMHSINALFLLGDTSLNCMRFPMFRFAYFVLWTSTFVIFQWIIHVCVSLWWPYPFLDLSSSYAPLWYLAVALMHFPCYGVFALIVRMKHLWLSKSFPGSSRFVR*

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