SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G03340 | AT | Annotation by Michelle Graham. TAIR10: ATPase, AAA-type, CDC48 protein | chr5:810091-813133 REVERSE LENGTH=810 | SoyBase | E_val: 1.00E-101 | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| PTHR23077 | Panther | AAA-FAMILY ATPASE | JGI | ISS | |
| PTHR23077:SF18 | Panther | CELL DIVISION CONTROL PROTEIN 48 AAA FAMILY PROTEIN (TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE) | JGI | ISS | |
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | ISS | |
| UniRef100_B9S0I3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transitional endoplasmic reticulum ATPase, putative n=1 Tax=Ricinus communis RepID=B9S0I3_RICCO | SoyBase | E_val: 4.00E-99 | ISS |
| UniRef100_UPI0002338537 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338537 related cluster n=1 Tax=unknown RepID=UPI0002338537 | SoyBase | E_val: 9.00E-110 | ISS |
|
Glyma08g39241 not represented in the dataset |
Glyma08g39241 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g284700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g39241.1 sequence type=CDS gene model=Glyma08g39241 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCTATTGTGAAAACTCTAATCTCAATGATGGTGTAACCAATGCATCAAATTCAAAGATCAGCATCCCCATAATTGACCTCACAGGCATCCATGATGATCCTATTTTGAGAGATCATGTTGTGGGAAAAGTTAGATATGCATGTGAGAAGTGGGGCTTCTTTCAGGTTATAAATCATGGAATTCCAACTCAGGTTTTGGATGAGATGATCAAAGGAACTTGCAGGTTTCACCAACAAGATGCAAAGGTGAGGAAAGAGTACTACACTCACAAAGTAAGCCAAAAAGTTGCTTATCTTTCCAATTATACTCTTTTTGAAGACCCTTCTGCTGATTGGAGGGATACACTTGCATTTTCCTTGGCACCTCATCCACCCGAAGCTGAAGAATTTCCTGCAGTTTATAGGGAGAAGATGGATGTCATTGATTTGGAAGATGAGAGTATTGATGCTGAAGTACTGAATTCTATGGCAGTTTCAAATGAGCATTTCCATACTGCTCTGGGAACAAGCAATCCATCTGCTTTACGAGAAATTGTTGTTGAGGTGCCTAATGTCAGCTGGGAGGATATTGGAGGCCTTGAGAATGTCAAGCGTGAGCTGCAAGAGACTGTTCAATATCCTGTGGAGCACCTAGAAAAATTTGAGAAGTTTGGTATGTCACCATTAAAAGGGGTTCTCTTCTATGGTCCTCCAGGATGTGGAAAAACTTTGTTGGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCAGTGTAAGGGGCCCAGAATTGCTCACTATGTGGTTTGGTGAAAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGGCCAAACAATCAGCTCCACGTGTCCTCTTCTTTGATGAGCTTGATTCCATTGCTACTCAGGTCTATTTTTGTACTTCGCATCCATGCAGGCCAGGTTGA
>Glyma08g39241.1 sequence type=predicted peptide gene model=Glyma08g39241 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFYCENSNLNDGVTNASNSKISIPIIDLTGIHDDPILRDHVVGKVRYACEKWGFFQVINHGIPTQVLDEMIKGTCRFHQQDAKVRKEYYTHKVSQKVAYLSNYTLFEDPSADWRDTLAFSLAPHPPEAEEFPAVYREKMDVIDLEDESIDAEVLNSMAVSNEHFHTALGTSNPSALREIVVEVPNVSWEDIGGLENVKRELQETVQYPVEHLEKFEKFGMSPLKGVLFYGPPGCGKTLLAKAIANECQANFISVRGPELLTMWFGESEANVREIFDKAKQSAPRVLFFDELDSIATQVYFCTSHPCRPG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
