Report for Sequence Feature Glyma08g39230
Feature Type: gene_model
Chromosome: Gm08
Start: 38707323
stop: 38708477
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g39230
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G23390 AT
Annotation by Michelle Graham. TAIR10: Kelch repeat-containing F-box family protein | chr1:8309449-8310633 REVERSE LENGTH=394
SoyBase E_val: 3.00E-89 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF00646 PFAM
F-box domain
JGI ISS
UniRef100_G7JXX3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein n=1 Tax=Medicago truncatula RepID=G7JXX3_MEDTR
SoyBase E_val: 9.00E-140 ISS
UniRef100_I1KXD1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KXD1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g39230
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma08g39230 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g284600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g39230
Coding sequences of Glyma08g39230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g39230.1 sequence type=CDS gene model=Glyma08g39230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAACATTCAAAGACGAAAAAGAAGAAGAAGAAGCTCCCATGCACGTAGACATCTTAGAGGCCATATTCTCACACGTGCCACTCATCCACCTCGTGCCAGCCTCTCACGTGTCGAATTCCTGGAAGCGTGCGGTCTCCACCTCCCTCCGCCACGTCAAGCCCGCCAAGCCCTGGCTCACCGTGCACACCCAGAGCCCCCGTGCCCCGCACGTGACCACCACCTTCGCCTACGACCCGCGCTCGCGAGAATGGTTCCAAATCCACGCGCCGAGTCCCAACCACACCACCGCCCTCCGCTCGTCGCACTCCACGCTCCTCTACACGCTCTCCCCCAGAGAATTCACCTTCTCTCTCGACCCTCTCAAGCTCGCCTGGCACCACGCCCGCCCACCGCGCGTGTGGCGCACCGACCCCACCGTCGCGCGCGTGGGAACCAAAATCATCCTCGCCGGCGGCGCGTGTGACTTCGAGGACGATCCCCTTGCGGTGGAGGCGTACGACGCGGAGTCACACGCCTGGCTCCGGTGCGAGCCCATGCCGGGGATTCTCAAAGGCTCAACCGCCTCCACGTGGCTCACCGTCGCCGTCGCCGGAGACAAGATGCACGTGACGGAGAAAAACTCCGGCGTGACGTGCTCGTTCGACTGCGGCACGATGACGTGGCAGGGACCGTTCAACTTACGTCCTGATCAGAGCGTTTTCCACTGCGTAACGGGAACGATACGCGGTCGTTTAATGGTGGCGGGTTTAGTGGGGGACGCGGAGAACGTGAAGGAGGTTAAGTTGTGGGAAGTGAAAGGAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTTGAGGAAATAGGAGCGGTTCCGAAGGAGATGGTGGTGAAGTTAGTAATGGGTGAAGGGGATTGTTGCTGTTGTTGGGGTGTGGCGGGGTCCATTGAGGTGAATTGGATTGGGGATTATGTGTATTTTCAGAACCGGATGGAACCGGAGGAGATGGTAGTGTGTGAGGTTGTGAATGGAAGGTGCGAGTGGGGGAGCGTGAGGAATGTGACGGTGAATGATGTGAGTCGCATGGGGAGAATGGTGTTTTCTGGTGGCCATGTGGGGCTTGAGGATTTGAAGAGGGCGGTTAAGGATAATTGTATGTTTGTGGAGAAAAAGTAA
Predicted protein sequences of Glyma08g39230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g39230.1 sequence type=predicted peptide gene model=Glyma08g39230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATFKDEKEEEEAPMHVDILEAIFSHVPLIHLVPASHVSNSWKRAVSTSLRHVKPAKPWLTVHTQSPRAPHVTTTFAYDPRSREWFQIHAPSPNHTTALRSSHSTLLYTLSPREFTFSLDPLKLAWHHARPPRVWRTDPTVARVGTKIILAGGACDFEDDPLAVEAYDAESHAWLRCEPMPGILKGSTASTWLTVAVAGDKMHVTEKNSGVTCSFDCGTMTWQGPFNLRPDQSVFHCVTGTIRGRLMVAGLVGDAENVKEVKLWEVKGGLGLGLGLGFEEIGAVPKEMVVKLVMGEGDCCCCWGVAGSIEVNWIGDYVYFQNRMEPEEMVVCEVVNGRCEWGSVRNVTVNDVSRMGRMVFSGGHVGLEDLKRAVKDNCMFVEKK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
