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Report for Sequence Feature Glyma08g39160

Feature Type:gene_model
Chromosome:Gm08
Start:38581807
stop:38584331
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g39160
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G70520AT Annotation by Michelle Graham. TAIR10: cysteine-rich RLK (RECEPTOR-like protein kinase) 2 | chr1:26584888-26587334 REVERSE LENGTH=649 SoyBaseE_val: 0ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0006857GO-bp Annotation by Michelle Graham. GO Biological Process: oligopeptide transport SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0010193GO-bp Annotation by Michelle Graham. GO Biological Process: response to ozone SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0046777GO-bp Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF433Panther SUBFAMILY NOT NAMED JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF01657PFAM Domain of unknown function DUF26 JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
UniRef100_C6ZRU6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase family protein n=1 Tax=Glycine max RepID=C6ZRU6_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1KXC8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KXC8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g39160
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g39160
ParalogEvidenceComments
Glyma18g20470 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g39160 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g284200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g39160
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g39160
>Glyma08g39160.2   sequence type=CDS   gene model=Glyma08g39160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAGATCAGTGAACAGATGCACAACACCGGTTATGGCACAGCAGTTGTAGGGACAGGAGGACCAGACACTAACTATGGATTGGCTCAGTGCTATGGTGATCTCTCATTACTTGACTATGTTTTATGTTATGCTGAGGCACGCACGGTTCTTCCCCAATGCTTTCCTTATAATGGCAGTGGAATATTCCTCAATGGGCCAGGAGACAAGGCTGTTTGTGGAAACACAACAAGGAGGAGCACAAATTTTCAAGCTGCAGCAAAGAAGGTTGTTTGGAGTGCTGTTCAAGCTGCACCAAACAATGAAGGGAGTTTGGACACAAGGTCTTGTAGAGCTAGTCTTGAGAATGCATCTTCTTCAATATTGGGGTGCTTGCCCTGGTCAGAAGGGAGAGCATTGAACACTGGATGCTTCATGAGGTACTCAGACAGAGATTTTCTTAACAAGGAACAGGAAAAAGGAAGTTCAGAAGATAATGTATTAGTGATAGTGGTTGCAGTGGTCAGTTCAGTGATTGTTTTGGTGGTTGGAATAGCTATTGTGGCTTATATCCGCAAACACAGATATATTCAAATGAAACGAAGAGTTAGCCAAGAGCTTCACCACAATAGCTTGAACTTCAAGTACTCTCTTGAAAAGGCTACTAATTCTTTTGATGAAGTTAACAGGCTTGGACAAGGTGGATTTGGAACGGGAGTTCTTGCTGATGGAAGAGAGATTGCTATCAAAACATTATACTTCAACAACAGACATAAAGCAGCAGATTTCTACAATAAAGTCAACATAATTAGCAGTGTGGAACACAAGAATCTAGTCAGACTCTTAGGATGCAGTTGCTCAGGACCTGAAAGCCTTCTTATATATGAATATCTACCAAACCGAAGTCTTGATCGCTTCATATTTGATAAAAACAAGGGTAAAGAACTAATCTGGGACAAGAGATATGACATTATCATTGGGACAGCTGAAGGATTGCTTCATGCTAAGATCGCTGATTTTGGTTTGGCCAGGTCCTTTCAAGAAGATAAGAGCCACATTAGTACAACTATTGCTGGAACTTTGGGTTATATGGCTCCAGAGTACCTAGCACATGGTCAATTAACAGAAAAAGCAGACGTATATAGCTTTGGAGTGTTACTGCTAGAAATAATTACTGGAAGACTGAACAGCAAAGCATCAGAATATTCGGACAGTCTAACATGGAAGCATTTTCAGTCAGGGACTGCGGAACAAGTAATTGATCCATGTCTAGTGTTGGATGACAACCATAGAAGCAATGTCCTGAATGAGATTTTAAGAGTGTTGCACATAGGACTTCTATGCACCCAAGAAATCCCTTCCTTAAGACCATCTATGTCAAAGGCATTAAAGATGCCAACAAAGAAGGAGGAGCACTTGGAATTGGAAGCTCCTTCCAATCCACCCTTCATACATGAAAGTACCATGGAACTCCATGACTAA
Predicted protein sequences of Glyma08g39160
>Glyma08g39160.2   sequence type=predicted peptide   gene model=Glyma08g39160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKISEQMHNTGYGTAVVGTGGPDTNYGLAQCYGDLSLLDYVLCYAEARTVLPQCFPYNGSGIFLNGPGDKAVCGNTTRRSTNFQAAAKKVVWSAVQAAPNNEGSLDTRSCRASLENASSSILGCLPWSEGRALNTGCFMRYSDRDFLNKEQEKGSSEDNVLVIVVAVVSSVIVLVVGIAIVAYIRKHRYIQMKRRVSQELHHNSLNFKYSLEKATNSFDEVNRLGQGGFGTGVLADGREIAIKTLYFNNRHKAADFYNKVNIISSVEHKNLVRLLGCSCSGPESLLIYEYLPNRSLDRFIFDKNKGKELIWDKRYDIIIGTAEGLLHAKIADFGLARSFQEDKSHISTTIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLEIITGRLNSKASEYSDSLTWKHFQSGTAEQVIDPCLVLDDNHRSNVLNEILRVLHIGLLCTQEIPSLRPSMSKALKMPTKKEEHLELEAPSNPPFIHESTMELHD*






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