SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G70570 | AT | Annotation by Michelle Graham. TAIR10: anthranilate phosphoribosyltransferase, putative | chr1:26608719-26612062 FORWARD LENGTH=595 | SoyBase | E_val: 0 | ISS |
| GO:0000162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tryptophan biosynthetic process | SoyBase | N/A | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0004048 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: anthranilate phosphoribosyltransferase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| PTHR11922 | Panther | GMP SYNTHASE-RELATED | JGI | ISS | |
| PTHR11922:SF1 | Panther | GMP SYNTHASE | JGI | ISS | |
| PF00591 | PFAM | Glycosyl transferase family, a/b domain | JGI | ISS | |
| UniRef100_B9SPJ6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Anthranilate phosphoribosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SPJ6_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KXB7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXB7_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma08g39020 not represented in the dataset |
Glyma08g39020 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g283100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g39020.1 sequence type=CDS gene model=Glyma08g39020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGTTCTGATTAACAATCCGAAACCATTTCTCTCATCACCAAACTCCATTTTCCCCAACAACAACCCTCGCTTTCATCTTCGCCCATTCCCCAAACGCCAATGGATCGGGCCAAGGCTCTGTTTGGCGAGGGCCGCGTTGGATTGGGCCACCATCGAGCAATTCGGGCTTCCCGAGTTCGACGTCCGGAACCCGGCGCTGTCGTCGTCGTATCGCCGTTCGGAGTTGCCCAGGCCCAACCAGACGGTGCTGGAGGCCCAGGCTAGGGTTTGCACCGGCCCGACCCAGACCCGCCCCCTCGACGAACAACAGGCCTTCAAGGTCTTCGACCTTATCCTCAGATCAGCTAGGGGAGGAATGAAAGATGAAGATGAAGTTTCTAAAGCACAACTTGGGGCATTTTTCGCGGGGATGACAATCCGTGCAAATGCATTTCCTGAGGCGACGCAATGGAGTGAAGGGGAAACACGTGCAATGAAGACATTCTGGCCACTTCTGGTTAGAGTTCTTCCACCTGAGGTTATATTCATTGCAGACCCGGAAGGGTTAATGATGGGTGTGGGAAGTTCAATTGGGCCGCAATATGTTGGCAATGGAACCAGTGAAATGCGATTGGTTGGTGCTCTTAGGGAGGTGTTGGCTGGTGGTCATCTTGGATTTGAGGAAGTGCAAGGTGTGTTAAAGGATGTCCTTCCCATCAAAGAGGGTGATGAAAAGCCTCAGGGAGTAAGTGAGGCTTTGCTTTCTGCATTTTTAATAGGTCAACGCATGAACCGTGAAACTGACCGCGAATTAAAAGCATACTGCCTTGCATTTGATGATGAAATTGGCCCCCCTCCTGTTGCTGATGTCAGATCATTGACTCATTATGGTGAACCTTATGATGGTAACACACGCTTCTTCAGGAGTACGCTATTCGTTGCTGCTGTTAGATCTTGCTATGGAGAGTCTTGCTTGCTTCATGGTGTAGATTGGATGGCACCTAAGGGGGGTGTAACTGAAGAGCAGATGTTGAAGTTTATGGGGGCAAATATAAATATATCCCCTTCCAAGGCCAAAAAACTTCTTGAGGATGATGAAGTTGGTTTTGCTTACGTAAGTCAGCGTGAAGCTCGCCCATCTCTCTACTCTTTAATTAAGATAAGGGAGCACATAAAGAAACGCCCTCCGCTTGCAACAACTGAAAAGGTTCAGCAATATGTAAAGGCAAATGGTAAGGAAGCTATTGTTGCTGGATTTTATCATGAAGGTTACGAAGAGCCATTGTTAATGCTCATGAAAAGAAGGGGAGTGCATTCAGGTTTGGTAGTGAAGGGAGAGGAAGGGGGCCTCTCATTGACTACAAGATTGCGATCAGCTAACACAACCAGGGGACTTCCTGTGAACTACTGTTCAGGTTTCCGTGCACTTGACATTTCATCCACATCTGAAGTGGGTGGAGTGGCACGTCATGGTTTTAGTCTTGAAGTCAATGCCAAGGATTACGGTTTCCAACCCACAGACACACCAAGAACTGATAGATCTGTCTCGAAGAACATTGAATTGGGTTTAGCTGCTCTCTATGGAGAAAAAGGACCAGCATATGACCGAATTGTCTTGAATGCCGGAGTTGTGGATCACTTGCTTGGAGTTGGTGGTGCAGAAGATATATCTGCAGCCCTGGATAGAGCCAGAGAGGCCATTGACAGTGGTAATGCTCTGAAACGACTCCTAAACTACATTAAGGTCTCCCACAAAATAGGTTGA
>Glyma08g39020.1 sequence type=predicted peptide gene model=Glyma08g39020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKVLINNPKPFLSSPNSIFPNNNPRFHLRPFPKRQWIGPRLCLARAALDWATIEQFGLPEFDVRNPALSSSYRRSELPRPNQTVLEAQARVCTGPTQTRPLDEQQAFKVFDLILRSARGGMKDEDEVSKAQLGAFFAGMTIRANAFPEATQWSEGETRAMKTFWPLLVRVLPPEVIFIADPEGLMMGVGSSIGPQYVGNGTSEMRLVGALREVLAGGHLGFEEVQGVLKDVLPIKEGDEKPQGVSEALLSAFLIGQRMNRETDRELKAYCLAFDDEIGPPPVADVRSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGVDWMAPKGGVTEEQMLKFMGANINISPSKAKKLLEDDEVGFAYVSQREARPSLYSLIKIREHIKKRPPLATTEKVQQYVKANGKEAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGGLSLTTRLRSANTTRGLPVNYCSGFRALDISSTSEVGGVARHGFSLEVNAKDYGFQPTDTPRTDRSVSKNIELGLAALYGEKGPAYDRIVLNAGVVDHLLGVGGAEDISAALDRAREAIDSGNALKRLLNYIKVSHKIG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
