Glyma08g38990 - SoyBase

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Report for Sequence Feature Glyma08g38990

Feature Type:	gene_model
Chromosome:	Gm08
Start:	38230945
stop:	38239539
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g38990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42490	AT	Annotation by Michelle Graham. TAIR10: Copper amine oxidase family protein \| chr2:17691600-17695526 REVERSE LENGTH=776	SoyBase	E_val: 0	ISS
GO:0009308	GO-bp	Annotation by Michelle Graham. GO Biological Process: amine metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0008131	GO-mf	Annotation by Michelle Graham. GO Molecular Function: primary amine oxidase activity	SoyBase	N/A	ISS
GO:0048038	GO-mf	Annotation by Michelle Graham. GO Molecular Function: quinone binding	SoyBase	N/A	ISS
KOG1186	KOG	Copper amine oxidase	JGI		ISS
PTHR10638	Panther	COPPER/TOPAQUINONE OXIDASE	JGI		ISS
PTHR10638:SF12	Panther	COPPER AMINE OXIDASE	JGI		ISS
PF01179	PFAM	Copper amine oxidase, enzyme domain	JGI		ISS
PF02727	PFAM	Copper amine oxidase, N2 domain	JGI		ISS
PF02728	PFAM	Copper amine oxidase, N3 domain	JGI		ISS
UniRef100_I1KXB5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXB5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9XHP4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peroxisomal copper-containing amine oxidase n=1 Tax=Glycine max RepID=Q9XHP4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g38990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g38990

Paralog	Evidence	Comments
Glyma18g20800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g38990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g282800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g38990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g38990

Limit To All Plant Sequences

>Glyma08g38990.2   sequence type=transcript   gene model=Glyma08g38990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGACTATCAGTTATAAAAGTACACTTTACTCACTCCTTTTCTTTCTTCCATACCCATGATTGATCTAGCTCTATTCTAATTGTCTGATTCCAATTTCGTTTCTTTTCATTTTCACCATCATTTTCTCTATATACTCTCATCTACGGAACAGAGTAACGTACTCCTTTTCTTACTTGGACTTAGCTACATGGTATCACTGTCATGGTGAGAGCTCAAACCAGCCACCCTTTGGATCCACTAACTGCTGCTGAAATATCAGTAGCTGTAGCGACCGTTCGAGCAGCTGGGGCAACACCTGAGGTGAGGGATGGCATGCGCTTTATTGAAGTAGACCTGGTAGAACCAGAAAAGCAAGTTGTTGCATTAGCAGATGCATATTTCTTCCCTCCTTTCCAACCATCACTGCTCCCTAGGACAAAAGGTGGACCTGTGATTCCAACTAAACTTCCTCCAAGGAAAGCAAGACTAGTTGTTTACAATAAAAAGTCGAATGAGACAAGCACATGGATTGTTGAACTTAGAGAAGTTCATGCAACAACTCGAGGTGGACACCATAGGGGCAAAGTGATTTCATCTACAGTTGTTCCTGATGTTCAGCCTCCAATGGATGCTGTGGAGTATGCTGAGTGTGAAGCTGTTGTAAAGGACTTTCCTCCCTTTCGTGAAGCAATGAAGAAGAGAGGGATTGAGGATATGGATCTCGTGATGGTAGATCCCTGGTGTGCTGGATATCACAGTGAAGCTGATGCTCCTAGCCGGAGACTTGCTAAACCACTAATCTTTTGTAGGACTGAAAGTGACTGCCCTATGGAAAATGGCTATGCCCGTCCAGTTGAGGGAATCCATGTACTTGTTGACATGCAAAATATGGTTGTTCTTGAATTTGAAGATCGTAAACTTGTCCCCCTTCCACCTGCTGATCCACTAAGAAATTATACTTCTGGTGAAACCCAAGGAGGAGTTGACCGAAGTGATGTGAAACCCTTGCAGATTATTCAGCCTGAAGGTCCAAGTTTTCGTGTTAATGGGCACTTCATTGAATGGCAGAAGTGGAATTTTCGTATTGGATTCACTCCTAGGGAGGGTTTGGTTATTCATTCAGTAGCCTATATTGATGGAAGTCGGGGACGGAGACCAGTGGCCCATAGATTGAGCTTTGTTGAGATGGTGGTCCCATATGGAGATCCTAATGATCCTCACTATAGGAAAAATGCTTTTGATGCTGGGGAAGATGGCTTGGGTAAAAATTCTCATTCTCTGAAGAAGGGCTGTGATTGTTTAGGCTATATCAAATACTTTGATGCGCATTTCACAAACTTCTATGGAGGTGTTGAAACAATTGAAAACTGTGTTTGTTTGCACGAAGAAGATCATGGTATTTTATGGAAGCATCAAGATTGGAGAACAGGTTTGGCTGAAGTTCGAAGGTCTAGAAGGCTGACAGTTTCTTTTATATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGGATGGAAAAATAGAAGCAGAGGTCAAGCTCACAGGAATTCTCAGCTTAGGAGCATTGCAACCAGGTGAAACTCGAAAATATGGCACAACCATTGCACCTGGACTATACGCGCCTGTCCACCAACATTTTTTTGTTGCTCGTATGGACATGGCAGTAGATTGCAAGCCTGGTGAAGCATTTAATCAGGTTGTTGAGGTGAATGTCAAAGTTGAAAAGCCAGGAGACAATAATGTTCATAACAATGCATTTTATGCTGAAGAAAAACTGCTTAAATCAGAAATGGAAGCAATGCGTGATTGTGACCCTTTATCTGCTCGTCACTGGATTGTTAGGAACACTAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGCTAGTACCTGGCTCAAATTGTTTACCTTTAGCTGGCTCAGAGGCCAAGTTTTTGAGAAGGGCAGCTTTCTTGAAACACAACCTTTGGGTTACTCCTTATGCACGCGATGAAATGCATCCTGGAGGAGAGTTCCCTAATCAAAATCCACGTGTTGGAGAGGGTTTGGCTACTTGGGTTAAGCAAAATCGATCACTGGAGGAAGCTGATATAGTTCTTTGGTACGTATTTGGAGTGACACACATTCCTAGATTGGAAGACTGGCCTGTTATGCCCGTGGAACGCATTGGTTTCATGCTTATGCCGCATGGGTTTTTCAATTGCTCGCCTGCTGTTGATGTTCCACCAAACCAAAGTGATTTGGATGACAAAGAGAATGGCCTGCCAGCCAAGCCTATTCAGAATGGGCTAATTGCCAAGCTTTGAAAGGATAAAAAATGAGGAGGATCTGCCTCTCTACGTGGTTATGTTCAAATTATTAAATAAAATATTCAATACAACTGTTTGTGCTGGTTTCAACCTGGCTGGATATTTAAGAAACGCCTATTACTGTAATTTGTACTGTATAACTTGTATGTACGTTTGTTGCATGGTAATGCTTGGTAACTTAAATGTTCATTTGATTTGATGTGGAATCTGTGCTGCTGAAGTACTTAATTAGGCGCCTCATTGTGCGAAGTTTAAAATAAAACTGGATGATAAAAGTATTTTTTTG

Coding sequences of Glyma08g38990

Limit To All Plant Sequences

>Glyma08g38990.1   sequence type=CDS   gene model=Glyma08g38990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACAGCTCAGGAAAAAACGACGCCATGTTGCGCCACCCAAAATAACAACAAGGTCGCACTCGCAGCACCTCCAACTTCTTCTTCTTCTGCGCCACAACAACAATCACAATCACAACAACGGCCCTCTGTTGCCACCTTCATTTCCGCCATCGATTCTCCTCCCAAAACCGCTTCTGCCAAAGGTATCACTGTCATGGTGAGAGCTCAAACCAGCCACCCTTTGGATCCACTAACTGCTGCTGAAATATCAGTAGCTGTAGCGACCGTTCGAGCAGCTGGGGCAACACCTGAGGTGAGGGATGGCATGCGCTTTATTGAAGTAGACCTGGTAGAACCAGAAAAGCAAGTTGTTGCATTAGCAGATGCATATTTCTTCCCTCCTTTCCAACCATCACTGCTCCCTAGGACAAAAGGTGGACCTGTGATTCCAACTAAACTTCCTCCAAGGAAAGCAAGACTAGTTGTTTACAATAAAAAGTCGAATGAGACAAGCACATGGATTGTTGAACTTAGAGAAGTTCATGCAACAACTCGAGGTGGACACCATAGGGGCAAAGTGATTTCATCTACAGTTGTTCCTGATGTTCAGCCTCCAATGGATGCTGTGGAGTATGCTGAGTGTGAAGCTGTTGTAAAGGACTTTCCTCCCTTTCGTGAAGCAATGAAGAAGAGAGGGATTGAGGATATGGATCTCGTGATGGTAGATCCCTGGTGTGCTGGATATCACAGTGAAGCTGATGCTCCTAGCCGGAGACTTGCTAAACCACTAATCTTTTGTAGGACTGAAAGTGACTGCCCTATGGAAAATGGCTATGCCCGTCCAGTTGAGGGAATCCATGTACTTGTTGACATGCAAAATATGGTTGTTCTTGAATTTGAAGATCGTAAACTTGTCCCCCTTCCACCTGCTGATCCACTAAGAAATTATACTTCTGGTGAAACCCAAGGAGGAGTTGACCGAAGTGATGTGAAACCCTTGCAGATTATTCAGCCTGAAGGTCCAAGTTTTCGTGTTAATGGGCACTTCATTGAATGGCAGAAGTGGAATTTTCGTATTGGATTCACTCCTAGGGAGGGTTTGGTTATTCATTCAGTAGCCTATATTGATGGAAGTCGGGGACGGAGACCAGTGGCCCATAGATTGAGCTTTGTTGAGATGGTGGTCCCATATGGAGATCCTAATGATCCTCACTATAGGAAAAATGCTTTTGATGCTGGGGAAGATGGCTTGGGTAAAAATTCTCATTCTCTGAAGAAGGGCTGTGATTGTTTAGGCTATATCAAATACTTTGATGCGCATTTCACAAACTTCTATGGAGGTGTTGAAACAATTGAAAACTGTGTTTGTTTGCACGAAGAAGATCATGGTATTTTATGGAAGCATCAAGATTGGAGAACAGGTTTGGCTGAAGTTCGAAGGTCTAGAAGGCTGACAGTTTCTTTTATATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGGATGGAAAAATAGAAGCAGAGGTCAAGCTCACAGGAATTCTCAGCTTAGGAGCATTGCAACCAGGTGAAACTCGAAAATATGGCACAACCATTGCACCTGGACTATACGCGCCTGTCCACCAACATTTTTTTGTTGCTCGTATGGACATGGCAGTAGATTGCAAGCCTGGTGAAGCATTTAATCAGGTTGTTGAGGTGAATGTCAAAGTTGAAAAGCCAGGAGACAATAATGTTCATAACAATGCATTTTATGCTGAAGAAAAACTGCTTAAATCAGAAATGGAAGCAATGCGTGATTGTGACCCTTTATCTGCTCGTCACTGGATTGTTAGGAACACTAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGCTAGTACCTGGCTCAAATTGTTTACCTTTAGCTGGCTCAGAGGCCAAGTTTTTGAGAAGGGCAGCTTTCTTGAAACACAACCTTTGGGTTACTCCTTATGCACGCGATGAAATGCATCCTGGAGGAGAGTTCCCTAATCAAAATCCACGTGTTGGAGAGGGTTTGGCTACTTGGGTTAAGCAAAATCGATCACTGGAGGAAGCTGATATAGTTCTTTGGTACGTATTTGGAGTGACACACATTCCTAGATTGGAAGACTGGCCTGTTATGCCCGTGGAACGCATTGGTTTCATGCTTATGCCGCATGGGTTTTTCAATTGCTCGCCTGCTGTTGATGTTCCACCAAACCAAAGTGATTTGGATGACAAAGAGAATGGCCTGCCAGCCAAGCCTATTCAGAATGGGCTAATTGCCAAGCTTTGA

>Glyma08g38990.2   sequence type=CDS   gene model=Glyma08g38990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAGAGCTCAAACCAGCCACCCTTTGGATCCACTAACTGCTGCTGAAATATCAGTAGCTGTAGCGACCGTTCGAGCAGCTGGGGCAACACCTGAGGTGAGGGATGGCATGCGCTTTATTGAAGTAGACCTGGTAGAACCAGAAAAGCAAGTTGTTGCATTAGCAGATGCATATTTCTTCCCTCCTTTCCAACCATCACTGCTCCCTAGGACAAAAGGTGGACCTGTGATTCCAACTAAACTTCCTCCAAGGAAAGCAAGACTAGTTGTTTACAATAAAAAGTCGAATGAGACAAGCACATGGATTGTTGAACTTAGAGAAGTTCATGCAACAACTCGAGGTGGACACCATAGGGGCAAAGTGATTTCATCTACAGTTGTTCCTGATGTTCAGCCTCCAATGGATGCTGTGGAGTATGCTGAGTGTGAAGCTGTTGTAAAGGACTTTCCTCCCTTTCGTGAAGCAATGAAGAAGAGAGGGATTGAGGATATGGATCTCGTGATGGTAGATCCCTGGTGTGCTGGATATCACAGTGAAGCTGATGCTCCTAGCCGGAGACTTGCTAAACCACTAATCTTTTGTAGGACTGAAAGTGACTGCCCTATGGAAAATGGCTATGCCCGTCCAGTTGAGGGAATCCATGTACTTGTTGACATGCAAAATATGGTTGTTCTTGAATTTGAAGATCGTAAACTTGTCCCCCTTCCACCTGCTGATCCACTAAGAAATTATACTTCTGGTGAAACCCAAGGAGGAGTTGACCGAAGTGATGTGAAACCCTTGCAGATTATTCAGCCTGAAGGTCCAAGTTTTCGTGTTAATGGGCACTTCATTGAATGGCAGAAGTGGAATTTTCGTATTGGATTCACTCCTAGGGAGGGTTTGGTTATTCATTCAGTAGCCTATATTGATGGAAGTCGGGGACGGAGACCAGTGGCCCATAGATTGAGCTTTGTTGAGATGGTGGTCCCATATGGAGATCCTAATGATCCTCACTATAGGAAAAATGCTTTTGATGCTGGGGAAGATGGCTTGGGTAAAAATTCTCATTCTCTGAAGAAGGGCTGTGATTGTTTAGGCTATATCAAATACTTTGATGCGCATTTCACAAACTTCTATGGAGGTGTTGAAACAATTGAAAACTGTGTTTGTTTGCACGAAGAAGATCATGGTATTTTATGGAAGCATCAAGATTGGAGAACAGGTTTGGCTGAAGTTCGAAGGTCTAGAAGGCTGACAGTTTCTTTTATATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGGATGGAAAAATAGAAGCAGAGGTCAAGCTCACAGGAATTCTCAGCTTAGGAGCATTGCAACCAGGTGAAACTCGAAAATATGGCACAACCATTGCACCTGGACTATACGCGCCTGTCCACCAACATTTTTTTGTTGCTCGTATGGACATGGCAGTAGATTGCAAGCCTGGTGAAGCATTTAATCAGGTTGTTGAGGTGAATGTCAAAGTTGAAAAGCCAGGAGACAATAATGTTCATAACAATGCATTTTATGCTGAAGAAAAACTGCTTAAATCAGAAATGGAAGCAATGCGTGATTGTGACCCTTTATCTGCTCGTCACTGGATTGTTAGGAACACTAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGCTAGTACCTGGCTCAAATTGTTTACCTTTAGCTGGCTCAGAGGCCAAGTTTTTGAGAAGGGCAGCTTTCTTGAAACACAACCTTTGGGTTACTCCTTATGCACGCGATGAAATGCATCCTGGAGGAGAGTTCCCTAATCAAAATCCACGTGTTGGAGAGGGTTTGGCTACTTGGGTTAAGCAAAATCGATCACTGGAGGAAGCTGATATAGTTCTTTGGTACGTATTTGGAGTGACACACATTCCTAGATTGGAAGACTGGCCTGTTATGCCCGTGGAACGCATTGGTTTCATGCTTATGCCGCATGGGTTTTTCAATTGCTCGCCTGCTGTTGATGTTCCACCAAACCAAAGTGATTTGGATGACAAAGAGAATGGCCTGCCAGCCAAGCCTATTCAGAATGGGCTAATTGCCAAGCTTTGA

Predicted protein sequences of Glyma08g38990

Limit To All Plant Sequences

>Glyma08g38990.1   sequence type=predicted peptide   gene model=Glyma08g38990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATAQEKTTPCCATQNNNKVALAAPPTSSSSAPQQQSQSQQRPSVATFISAIDSPPKTASAKGITVMVRAQTSHPLDPLTAAEISVAVATVRAAGATPEVRDGMRFIEVDLVEPEKQVVALADAYFFPPFQPSLLPRTKGGPVIPTKLPPRKARLVVYNKKSNETSTWIVELREVHATTRGGHHRGKVISSTVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDMDLVMVDPWCAGYHSEADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIHVLVDMQNMVVLEFEDRKLVPLPPADPLRNYTSGETQGGVDRSDVKPLQIIQPEGPSFRVNGHFIEWQKWNFRIGFTPREGLVIHSVAYIDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNSHSLKKGCDCLGYIKYFDAHFTNFYGGVETIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLTVSFICTVANYEYGFFWHFYQDGKIEAEVKLTGILSLGALQPGETRKYGTTIAPGLYAPVHQHFFVARMDMAVDCKPGEAFNQVVEVNVKVEKPGDNNVHNNAFYAEEKLLKSEMEAMRDCDPLSARHWIVRNTRTVNRTGHLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNLWVTPYARDEMHPGGEFPNQNPRVGEGLATWVKQNRSLEEADIVLWYVFGVTHIPRLEDWPVMPVERIGFMLMPHGFFNCSPAVDVPPNQSDLDDKENGLPAKPIQNGLIAKL*

>Glyma08g38990.2   sequence type=predicted peptide   gene model=Glyma08g38990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRAQTSHPLDPLTAAEISVAVATVRAAGATPEVRDGMRFIEVDLVEPEKQVVALADAYFFPPFQPSLLPRTKGGPVIPTKLPPRKARLVVYNKKSNETSTWIVELREVHATTRGGHHRGKVISSTVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDMDLVMVDPWCAGYHSEADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIHVLVDMQNMVVLEFEDRKLVPLPPADPLRNYTSGETQGGVDRSDVKPLQIIQPEGPSFRVNGHFIEWQKWNFRIGFTPREGLVIHSVAYIDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNSHSLKKGCDCLGYIKYFDAHFTNFYGGVETIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLTVSFICTVANYEYGFFWHFYQDGKIEAEVKLTGILSLGALQPGETRKYGTTIAPGLYAPVHQHFFVARMDMAVDCKPGEAFNQVVEVNVKVEKPGDNNVHNNAFYAEEKLLKSEMEAMRDCDPLSARHWIVRNTRTVNRTGHLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNLWVTPYARDEMHPGGEFPNQNPRVGEGLATWVKQNRSLEEADIVLWYVFGVTHIPRLEDWPVMPVERIGFMLMPHGFFNCSPAVDVPPNQSDLDDKENGLPAKPIQNGLIAKL*

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