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Report for Sequence Feature Glyma08g38971

Feature Type:gene_model
Chromosome:Gm08
Start:38214797
stop:38215544
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g38971
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G23300AT Annotation by Michelle Graham. TAIR10: MATE efflux family protein | chr1:8263827-8266048 REVERSE LENGTH=515 SoyBaseE_val: 7.00E-16ISS
GO:0006855GO-bp Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0015238GO-mf Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity SoyBaseN/AISS
GO:0015297GO-mf Annotation by Michelle Graham. GO Molecular Function: antiporter activity SoyBaseN/AISS
PTHR11206Panther MULTIDRUG RESISTANCE PUMP JGI ISS
PTHR11206:SF46Panther MULTI ANTIMICROBIAL EXTRUSION (MATE) FAMILY TRANSPORTER JGI ISS
UniRef100_B9SPK5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Multidrug resistance pump, putative n=1 Tax=Ricinus communis RepID=B9SPK5_RICCO SoyBaseE_val: 3.00E-17ISS
UniRef100_UPI000233EC70UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EC70 related cluster n=1 Tax=unknown RepID=UPI000233EC70 SoyBaseE_val: 6.00E-23ISS

Expression Patterns of Glyma08g38971
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g38971 not represented in the dataset
Glyma08g38971 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g38971 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g282700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g38971
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g38971
>Glyma08g38971.1   sequence type=CDS   gene model=Glyma08g38971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGATAATTTTCAGGGGATTTGGTCTGGAATGCTGTCAGGAACTATCTTACAAACTTGTGTTCTATTCTTCCTTGTCTATAGAACAGATTGGAATAAAGAGGCATCCCTTGCGGAAGATAGAATAAAGCAGTGGGGTGGGCATGAAGATTCATAA
Predicted protein sequences of Glyma08g38971
>Glyma08g38971.1   sequence type=predicted peptide   gene model=Glyma08g38971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIDNFQGIWSGMLSGTILQTCVLFFLVYRTDWNKEASLAEDRIKQWGGHEDS*






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