Glyma08g38950 - SoyBase

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Report for Sequence Feature Glyma08g38950

Feature Type:	gene_model
Chromosome:	Gm08
Start:	38204926
stop:	38213434
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g38950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G26590	AT	Annotation by Michelle Graham. TAIR10: MATE efflux family protein \| chr3:9761927-9765259 REVERSE LENGTH=500	SoyBase	E_val: 9.00E-175	ISS
GO:0006855	GO-bp	Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015238	GO-mf	Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015297	GO-mf	Annotation by Michelle Graham. GO Molecular Function: antiporter activity	SoyBase	N/A	ISS
PTHR11206	Panther	MULTIDRUG RESISTANCE PUMP	JGI		ISS
PTHR11206:SF46	Panther	MULTI ANTIMICROBIAL EXTRUSION (MATE) FAMILY TRANSPORTER	JGI		ISS
PF01554	PFAM	MatE	JGI		ISS
UniRef100_G7LJC9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein TRANSPARENT TESTA n=1 Tax=Medicago truncatula RepID=G7LJC9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N1K5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N1K5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g38950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g38950

Paralog	Evidence	Comments
Glyma18g20820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g38950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g282600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g38950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g38950

Limit To All Plant Sequences

>Glyma08g38950.2   sequence type=CDS   gene model=Glyma08g38950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGACCATGACGACCAAACTCACCCACTTCTCACGCGGCGACACCACACACCAGACTCCTCCGCCGTCGTCTTCACGGCGACATCCGATGATATCGCTCCGATAGGCGGCGCCGGCGACTTCGCCAGAGAGTTCTTCGCCGAGTCGAAGAAGCTCTGGTACCTCGCCGGCCCTGCCATCTTCACCTCCGTCTGCCAGTACTCCCTCGGCGGCGTCACCCAAGTCTTCTCCGTCCACGTCAACACCCTCGCCCTCGCCGCCGTCTCTGTCGAAAACTCCGTCATCGCCGGCTTCAGCCTAGGCATCACGTTTGGAATGGGAAGCGCGTTGGAAACGCTATGTGGACAAGCTTACGGAGCGGGGCAAGTGCACATGCTGGGAGTGTACATGCAGCGCTCGTGGGTGATTCTGAACGCCACCGCGATCCTGCTGTCGCTCCTCTACATCTTCGCGGGGCATATGCTTAGAGCTATAGGGCAGACGGAGGCGATTTCGGCGGCGGCGGGGGAGTTCGCGTTGTGGATGATCCCGCAGCTGTTCGCGTACGCGGTGAACTACCCGGCGCAGAAGTTCCTGCAGGCGCAAAGCAGGATCATGGTGATGGCGTGGATCGCGGCGGCGGCGCTGGTGCTGCACACTTTGTTCAGCTGGTTGCTCATTCTGGAGTTCGGGTGGGGTCTCGTCGGCGCCGCCGTGGTGCTGAACGCGTCGTGGTGGTTCATCGACATTGCACAGCTCGTTTATATAGTGAGTGGGGCCTGTGGGGAGGCTTGGTCCGGATTTACCTTCAAAGCCTTTCACAATCTCTGGGGCTTCGTTCGTCTCTCTCTTGCCTCTGCTGTCATGCTCTGCCTTGAAGTGTGGTATTTTATGGCCCTGGTCCTCTTCGCTGGATATTTAAAGAATGCAGAAGTTTCGGTCGATGCCTTATCTATCTGCATGAACATATTGGGATGGACCATCATGGTATCCTTTGGAATGAACGCAGCCGTAAGTGTGAGGGTGTCACATGAATTAGGAGCATCTCACCCAAGAACAGCAAAGTTTTCA

Predicted protein sequences of Glyma08g38950

Limit To All Plant Sequences

>Glyma08g38950.2   sequence type=predicted peptide   gene model=Glyma08g38950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDHDDQTHPLLTRRHHTPDSSAVVFTATSDDIAPIGGAGDFAREFFAESKKLWYLAGPAIFTSVCQYSLGGVTQVFSVHVNTLALAAVSVENSVIAGFSLGITFGMGSALETLCGQAYGAGQVHMLGVYMQRSWVILNATAILLSLLYIFAGHMLRAIGQTEAISAAAGEFALWMIPQLFAYAVNYPAQKFLQAQSRIMVMAWIAAAALVLHTLFSWLLILEFGWGLVGAAVVLNASWWFIDIAQLVYIVSGACGEAWSGFTFKAFHNLWGFVRLSLASAVMLCLEVWYFMALVLFAGYLKNAEVSVDALSICMNILGWTIMVSFGMNAAVSVRVSHELGASHPRTAKFS

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