Report for Sequence Feature Glyma08g38840
Feature Type: gene_model
Chromosome: Gm08
Start: 38084402
stop: 38090385
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g38840
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G26570 AT
Annotation by Michelle Graham. TAIR10: phosphate transporter 2;1 | chr3:9756416-9758413 FORWARD LENGTH=587
SoyBase E_val: 0 ISS
GO:0006817 GO-bp
Annotation by Michelle Graham. GO Biological Process: phosphate ion transport
SoyBase N/A ISS
GO:0009556 GO-bp
Annotation by Michelle Graham. GO Biological Process: microsporogenesis
SoyBase N/A ISS
GO:0016117 GO-bp
Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process
SoyBase N/A ISS
GO:0052543 GO-bp
Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0005315 GO-mf
Annotation by Michelle Graham. GO Molecular Function: inorganic phosphate transmembrane transporter activity
SoyBase N/A ISS
GO:0009673 GO-mf
Annotation by Michelle Graham. GO Molecular Function: low affinity phosphate transmembrane transporter activity
SoyBase N/A ISS
KOG2493
KOG
Na+/Pi symporter
JGI ISS
PTHR11101 Panther
PHOSPHATE TRANSPORTER
JGI ISS
PTHR11101:SF8 Panther
CHLOROPLAST PHOSPHATE TRANSPORTER
JGI ISS
PF01384 PFAM
Phosphate transporter family
JGI ISS
UniRef100_I1KXB0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXB0_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q8GTR3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Inorganic phosphate transporter 2-1 n=1 Tax=Medicago truncatula RepID=Q8GTR3_MEDTR
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g38840
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g38840
Paralog Evidence Comments
Glyma18g20870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g38840 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g282100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g38840
Coding sequences of Glyma08g38840
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g38840.1 sequence type=CDS gene model=Glyma08g38840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATCCCTCTTGTCGCTTCTCTTCAACTAAACACACCTCCTTCCTTCACAACTCTCACACCCACCTCTCCAAAACCACTTCCCCTTATGTCTTCCTCGGACACTCTCACTCTCAGAAACCTTTTCTCTTATCACCACCAATAACAACAAAGCCTTATCCTTTTAATAACATTCTCAGGTTCAGAAACATCAAACTCTCTTACCCTTTCGCAACGCTTTCATCTTTCGCTGAGGGAGAACAACAAGAGAATCAGGAGGGAACAGAAACACCACCGAGCAACGATGAATTGGGAGGAATTGCGAAGGCCTTCAACATATCGTCTCGAACGGCTTCTGCCATATCGATATGCATGGCATTGGCGGTGTTGACTTTTCCGTTGTTCATGACTTCTTTGGGGCAGGGCATGGTTCTGAAGACGAAGGTGCTGTCGTACGCGACGTTGCTGTTCGGGTTCTACATGGCGTGGAACATCGGCGCCAACGACGTGGCGAATGCGATGGGGACGTCGGTGGGATCCGGCGCCCTCACGCTCCGGCAGGCGGTGCTGACGGCGGCGGTGCTCGAGTTCTCCGGGGCGCTGATGATGGGAACGCACGTGACCAGCACGATGCAGAAGGGGATTCTCGTCGCGAACGTGTTCAATGGGAAGGATTCTTTGCTCTTCGCCGGGTTGCTCTCTTCTCTCGCCGCTGCTGGCACTTGGTTACAGTTTGCATCATATTATGGTTGGCCAGTATCTACTACACATTGTATAGTGGGAGCAATGGTGGGGTTTGGCCTAGCTTATGGAGGTGCCGGAGCTGTTTTCTGGGGTTCACTGGCCAGGGTGATCTCTTCGTGGGTTGTCTCACCACTAATGGGAGCTGCTGTGTCTTTTCTTGTCTATAAATGCATTCGAAGGTTTGTATACAGTGCACCTAACCCCGGTCTAGCAGCAGCTGCAGCGGCACCAATTGCTGTATTTCTGGGTGTAACGGGGATTTCATTTGTTGCATTTCCTCTTAGCAAGAGTTTCCCTTTTGCTCTGGTCCAAGCTTTAGCCTCTGGAACTGTTGGTGCTTTTCTGGTAGACAGAATCATCAGAAAACAGCTTGGACATCTTCTTGTCAAGTCAAGTACTCCAGAGCCTGAGCCAAAAGAAGACACTGTCCACCACCACAATATCGGATTCCTCGACGATGTTGCAGGCCCGAAGGGTGCTCAACTGGAAATAGTTTATGGAGTCTTTGGTTACATGCAGGTCCTCTCAGCATGTTTCATGTCATTTGCTCATGGTGGAAACGATGTCTCCAACGCTATAGGTCCATTGGCGGGTGCACTAGCTATTCTTCAAGGCAGTACCATGGGAACTGAGATTATTATTCCAACTGATGTCCTTGCTTGGGGAGGATTTGGAATCGTTGCAGGGCTTATGATGTGGGGTTATAGAGTGATAGCTACAATAGGAAAGAAGATAACAGAACTTACACCAACAAGAGGATTTGCAGCTGAGTTTGCTGCTGCCTCTGTTGTTCTGTTTGCCTCAAAGCTGGGGCTACCCATCTCAGCAACCCATACTCTAGTAGGTGCAGTAATGGGAGTTGGATTTGCAAGGGGATTTAACAGTGTTAGATCAGAAACTGTGAAGGAGATTGTGGCTTCATGGGTAGTCACTATTCCAGTTGGTGCTTCTCTATCAGTTCTCTACACTTGGATCTTGACTAAGATTTTGTCTTATATTTTATGA
Predicted protein sequences of Glyma08g38840
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g38840.1 sequence type=predicted peptide gene model=Glyma08g38840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNPSCRFSSTKHTSFLHNSHTHLSKTTSPYVFLGHSHSQKPFLLSPPITTKPYPFNNILRFRNIKLSYPFATLSSFAEGEQQENQEGTETPPSNDELGGIAKAFNISSRTASAISICMALAVLTFPLFMTSLGQGMVLKTKVLSYATLLFGFYMAWNIGANDVANAMGTSVGSGALTLRQAVLTAAVLEFSGALMMGTHVTSTMQKGILVANVFNGKDSLLFAGLLSSLAAAGTWLQFASYYGWPVSTTHCIVGAMVGFGLAYGGAGAVFWGSLARVISSWVVSPLMGAAVSFLVYKCIRRFVYSAPNPGLAAAAAAPIAVFLGVTGISFVAFPLSKSFPFALVQALASGTVGAFLVDRIIRKQLGHLLVKSSTPEPEPKEDTVHHHNIGFLDDVAGPKGAQLEIVYGVFGYMQVLSACFMSFAHGGNDVSNAIGPLAGALAILQGSTMGTEIIIPTDVLAWGGFGIVAGLMMWGYRVIATIGKKITELTPTRGFAAEFAAASVVLFASKLGLPISATHTLVGAVMGVGFARGFNSVRSETVKEIVASWVVTIPVGASLSVLYTWILTKILSYIL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
