Warning : Undefined variable $sxsome in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $sstart in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $send in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma08g38760): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1019
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma08g38760): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1021
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1025
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1031
Report for Sequence Feature Glyma08g38760
Feature Type: gene_model
Chromosome: Gm08
Start: 37978318
stop: 37979755
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g38760
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G67910 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). | chr1:25471534-25471809 REVERSE LENGTH=91
SoyBase E_val: 4.00E-21 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_G7LJB9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: PGPS/D10 n=1 Tax=Medicago truncatula RepID=G7LJB9_MEDTR
SoyBase E_val: 2.00E-36 ISS
UniRef100_I1KXA7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXA7_SOYBN
SoyBase E_val: 9.00E-71 ISS
Expression Patterns of Glyma08g38760
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g38760
Paralog Evidence Comments
Glyma18g20990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g38760 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g281800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g38760
Transcripts of Glyma08g38760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g38760.6 sequence type=transcript gene model=Glyma08g38760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GCATGCATACTAAATTGCAAGTTGAGACCCACAGCAAAGGTAGGGTAATTGACATCCACTCGAATGTCTGCCATCATGTGTGGGTCCGAAAAGCATTGGTGTTTATTGTTTAGGGGCCAAACTTTGCGTCATGATTCAATGCAACTCCACACAAAAGAGAGAAATTCGATGATCTGATATGATTTCATGTTGCCAGTGGTTGAAGCACATAAACATATATAGTATACCAAATCCAAAAGAGATCAAAATGTAGGTGGGGGCGTTAGTTAAATTAATTATCAAACCCGTGATATGAACAGAAAGAAAGCACACAAACTTGTGTGTTGCATATTGATCCATATTTTTATATCACATTGCATCATGGGTCTTATGCATATGTGCAAATCGACTTTTCTCTCCATCTCCATAATTTGCTTCTATTCTTTAATAAAGTTCTTCAACCCTGAAGGTTCCTGAAGACCCTTCTTAAGGTTTGGTCTCCAAATACATTGCAGGAATTGGAGAGCATGGAAAGTGACCAGAAAGTTCAAATGGCATCTAGGAGTGAGGTCGTGTCAAGTGTTGCTGGGGTGGAGTTTCAAGGGGCTCCTAATTTGGGACAAGGTGGTGGTGGTGGTGGCCTTCAGAGACAACCTAGTATGACCAAGAGCAATTGTCTTTGTTCTCCAACCACACATGCTGGTTCTTTTCGTTGCCGGCTTCACCGTGCCCCTAGCCTCCAGAGGACCAAAAGCATGGAATCAGAGTCCCTCAGGGATCAGGCATCTACGGTTCATTCTTCAATTGTTGATGCTGTTGCTGTTGCTAACAAGGATCCAGTTCATTGATCTTCTGATGAATTGAATGTTAAATTGTTACTAAGCTGCTATATGATTACTTGTGTTTAGGCGCGTCATGTTGTTTACTTTCTATCTATTTATAAAATGAGAAAAAAAAAATTGATGAATTGACAGTGTAAAATTTTTTACAAAGTCATCTAATCATAAACCAATGGTAAGTTATAATAATTGCAAGGTGTAGAGATGTATGTCATGTAAGTAATTTTACTCTATACGATTGTCACGTTAACAATTTGGGATCATTTAATTTCATTCCTGCTTGATTGTCC
>Glyma08g38760.7 sequence type=transcript gene model=Glyma08g38760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GCATGCATACTAAATTGCAAGTTGAGACCCACAGCAAAGGTAGGGTAATTGACATCCACTCGAATGTCTGCCATCATGTGTGGGTCCGAAAAGCATTGGTGTTTATTGTTTAGGGGCCAAACTTTGCGTCATGATTCAATGCAACTCCACACAAAAGAGAGAAATTCGATGATCTGATATGATTTCATGTTGCCAGTGGTTGAAGCACATAAACATATATAGTATACCAAATCCAAAAGAGATCAAAATGTAGGTGGGGGCGTTAGTTAAATTAATTATCAAACCCGTGATATGAACAGAAAGAAAGCACACAAACTTGTGTGTTGCATATTGATCCATATTTTTATATCACATTGCATCATGGGTCTTATGCATATGTGCAAATCGACTTTTCTCTCCATCTCCATAATTTGCTTCTATTCTTTAATAAAGTTCTTCAACCCTGAAGGTTCCTGAAGACCCTTCTTAAGGTTTGGTCTCCAAATACATGTAGTGCAGGAATTGGAGAGCATGGAAAGTGACCAGAAAGTTCAAATGGCATCTAGGAGTGAGGTCGTGTCAAGTGTTGCTGGGGTGGAGTTTCAAGGGGCTCCTAATTTGGGACAAGGTGGTGGTGGTGGTGGCCTTCAGAGACAACCTAGTATGACCAAGAGCAATTGTCTTTGTTCTCCAACCACACATGCTGGTTCTTTTCGTTGCCGGCTTCACCGTGCCCCTAGCCTCCAGAGGACCAAAAGCATGGAATCAGAGTCCCTCAGGGATCAGGCATCTACGGTTCATTCTTCAATTGTTGATGCTGTTGCTGTTGCTAACAAGGATCCAGTTCATTGATCTTCTGATGAATTGAATGTTAAATTGTTACTAAGCTGCTATATGATTACTTGTGTTTAGGCGCGTCATGTTGTTTACTTTCTATCTATTTATAAAATGAGAAAAAAAAAATTGATGAATTGACAGTGTAAAATTTTTTACAAAGTCATCTAATCATAAACCAATGGTAAGTTATAATAATTGCAAGGTGTAGAGATGTATGTCATGTAAGTAATTTTACTCTATACGATTGTCACGTTAACAATTTGGGATCATTTAATTTCATTCCTGCTTGATTGTCC
>Glyma08g38760.8 sequence type=transcript gene model=Glyma08g38760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CTTTTCTCTCCATCTCCATAATTTGCTTCTATTCTTTAATAAAGTTCTTCAACCCTGAAGGTTCCTGAAGACCCTTCTTAAGGTAGTGCAGGAATTGGAGAGCATGGAAAGTGACCAGAAAGTTCAAATGGCATCTAGGAGTGAGGTCGTGTCAAGTGTTGCTGGGGTGGAGTTTCAAGGGGCTCCTAATTTGGGACAAGGTGGTGGTGGTGGTGGCCTTCAGAGACAACCTAGTATGACCAAGAGCAATTGTCTTTGTTCTCCAACCACACATGCTGGTTCTTTTCGTTGCCGGCTTCACCGTGCCCCTAGCCTCCAGAGGACCAAAAGCATGGAATCAGAGTCCCTCAGGGATCAGGCATCTACGGTTCATTCTTCAATTGTTGATGCTGTTGCTGTTGCTAACAAGGATCCAGTTCATTGATCTTCTGATGAATTGAATGTTAAATTGTTACTAAGCTGCTATATGATTACTTGTGTTTAGGCGCGTCATGTTGTTTACTTTCTATCTATTTATAAAATGA
>Glyma08g38760.9 sequence type=transcript gene model=Glyma08g38760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTTCTTCAACCCTGAAGGTTCCTGAAGACCCTTCTTAAGGAATTGGAGAGCATGGAAAGTGACCAGAAAGTTCAAATGGCATCTAGGAGTGAGGTCGTGTCAAGTGTTGCTGGGGTGGAGTTTCAAGGGGCTCCTAATTTGGGACAAGGTGGTGGTGGTGGTGGCCTTCAGAGACAACCTAGTATGACCAAGAGCAATTGTCTTTGTTCTCCAACCACACATGCTGGTTCTTTTCGTTGCCGGCTTCACCGTGCCCCTAGCCTCCAGAGGACCAAAAGCATGGAATCAGAGTCCCTCAGGGATCAGGCATCTACGGTTCATTCTTCAATTGTTGATGCTGTTGCTGTTGCTAACAAGGATCCAGTTCATTGATCTTCTGATGAATTGAATGTTAAATTGTTACTAAGCTGCTATATGATTACTTGTGTTTAGGCGCGTCATGTTGTTTACTTTCTATCTATTTATAAAATGA
Coding sequences of Glyma08g38760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g38760.5 sequence type=CDS gene model=Glyma08g38760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAAGTGACCAGAAAGTTCAAATGGCATCTAGGAGTGAGGTCGTGTCAAGTGTTGCTGGGGTGGAGTTTCAAGGGGCTCCTAATTTGGGACAAGGTGGTGGTGGTGGTGGCCTTCAGAGACAACCTAGTATGACCAAGAGCAATTGTCTTTGTTCTCCAACCACACATGCTGGTTCTTTTCGTTGCCGGCTTCACCGTGCCCCTAGCCTCCAGAGGACCAAAAGCATGGAATCAGAGTCCCTCAGGGATCAGGCATCTACGGTTCATTCTTCAATTGTTGATGCTGTTGCTGTTGCTAACAAGGATCCAGTTCATTGA
>Glyma08g38760.6 sequence type=CDS gene model=Glyma08g38760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAAGTGACCAGAAAGTTCAAATGGCATCTAGGAGTGAGGTCGTGTCAAGTGTTGCTGGGGTGGAGTTTCAAGGGGCTCCTAATTTGGGACAAGGTGGTGGTGGTGGTGGCCTTCAGAGACAACCTAGTATGACCAAGAGCAATTGTCTTTGTTCTCCAACCACACATGCTGGTTCTTTTCGTTGCCGGCTTCACCGTGCCCCTAGCCTCCAGAGGACCAAAAGCATGGAATCAGAGTCCCTCAGGGATCAGGCATCTACGGTTCATTCTTCAATTGTTGATGCTGTTGCTGTTGCTAACAAGGATCCAGTTCATTGA
>Glyma08g38760.7 sequence type=CDS gene model=Glyma08g38760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAAGTGACCAGAAAGTTCAAATGGCATCTAGGAGTGAGGTCGTGTCAAGTGTTGCTGGGGTGGAGTTTCAAGGGGCTCCTAATTTGGGACAAGGTGGTGGTGGTGGTGGCCTTCAGAGACAACCTAGTATGACCAAGAGCAATTGTCTTTGTTCTCCAACCACACATGCTGGTTCTTTTCGTTGCCGGCTTCACCGTGCCCCTAGCCTCCAGAGGACCAAAAGCATGGAATCAGAGTCCCTCAGGGATCAGGCATCTACGGTTCATTCTTCAATTGTTGATGCTGTTGCTGTTGCTAACAAGGATCCAGTTCATTGA
>Glyma08g38760.8 sequence type=CDS gene model=Glyma08g38760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAAGTGACCAGAAAGTTCAAATGGCATCTAGGAGTGAGGTCGTGTCAAGTGTTGCTGGGGTGGAGTTTCAAGGGGCTCCTAATTTGGGACAAGGTGGTGGTGGTGGTGGCCTTCAGAGACAACCTAGTATGACCAAGAGCAATTGTCTTTGTTCTCCAACCACACATGCTGGTTCTTTTCGTTGCCGGCTTCACCGTGCCCCTAGCCTCCAGAGGACCAAAAGCATGGAATCAGAGTCCCTCAGGGATCAGGCATCTACGGTTCATTCTTCAATTGTTGATGCTGTTGCTGTTGCTAACAAGGATCCAGTTCATTGA
>Glyma08g38760.9 sequence type=CDS gene model=Glyma08g38760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAAGTGACCAGAAAGTTCAAATGGCATCTAGGAGTGAGGTCGTGTCAAGTGTTGCTGGGGTGGAGTTTCAAGGGGCTCCTAATTTGGGACAAGGTGGTGGTGGTGGTGGCCTTCAGAGACAACCTAGTATGACCAAGAGCAATTGTCTTTGTTCTCCAACCACACATGCTGGTTCTTTTCGTTGCCGGCTTCACCGTGCCCCTAGCCTCCAGAGGACCAAAAGCATGGAATCAGAGTCCCTCAGGGATCAGGCATCTACGGTTCATTCTTCAATTGTTGATGCTGTTGCTGTTGCTAACAAGGATCCAGTTCATTGA
Predicted protein sequences of Glyma08g38760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g38760.5 sequence type=predicted peptide gene model=Glyma08g38760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MESDQKVQMASRSEVVSSVAGVEFQGAPNLGQGGGGGGLQRQPSMTKSNCLCSPTTHAGSFRCRLHRAPSLQRTKSMESESLRDQASTVHSSIVDAVAVANKDPVH*
>Glyma08g38760.6 sequence type=predicted peptide gene model=Glyma08g38760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MESDQKVQMASRSEVVSSVAGVEFQGAPNLGQGGGGGGLQRQPSMTKSNCLCSPTTHAGSFRCRLHRAPSLQRTKSMESESLRDQASTVHSSIVDAVAVANKDPVH*
>Glyma08g38760.7 sequence type=predicted peptide gene model=Glyma08g38760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MESDQKVQMASRSEVVSSVAGVEFQGAPNLGQGGGGGGLQRQPSMTKSNCLCSPTTHAGSFRCRLHRAPSLQRTKSMESESLRDQASTVHSSIVDAVAVANKDPVH*
>Glyma08g38760.8 sequence type=predicted peptide gene model=Glyma08g38760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MESDQKVQMASRSEVVSSVAGVEFQGAPNLGQGGGGGGLQRQPSMTKSNCLCSPTTHAGSFRCRLHRAPSLQRTKSMESESLRDQASTVHSSIVDAVAVANKDPVH*
>Glyma08g38760.9 sequence type=predicted peptide gene model=Glyma08g38760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MESDQKVQMASRSEVVSSVAGVEFQGAPNLGQGGGGGGLQRQPSMTKSNCLCSPTTHAGSFRCRLHRAPSLQRTKSMESESLRDQASTVHSSIVDAVAVANKDPVH*