SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g38450

Feature Type:gene_model
Chromosome:Gm08
Start:37546005
stop:37554343
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g38450
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G22480AT Annotation by Michelle Graham. TAIR10: phosphofructokinase 5 | chr2:9545670-9548414 FORWARD LENGTH=537 SoyBaseE_val: 0ISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0007010GO-bp Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization SoyBaseN/AISS
GO:0010498GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process SoyBaseN/AISS
GO:0005945GO-cc Annotation by Michelle Graham. GO Cellular Compartment: 6-phosphofructokinase complex SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003872GO-mf Annotation by Michelle Graham. GO Molecular Function: 6-phosphofructokinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG2440 KOG Pyrophosphate-dependent phosphofructo-1-kinase JGI ISS
PTHR13697Panther PHOSPHOFRUCTOKINASE JGI ISS
PF00365PFAM Phosphofructokinase JGI ISS
UniRef100_G7LJ94UniRef Annotation by Michelle Graham. Most informative UniRef hit: 6-phosphofructokinase n=1 Tax=Medicago truncatula RepID=G7LJ94_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI00023383BDUniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023383BD related cluster n=1 Tax=unknown RepID=UPI00023383BD SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g38450
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g38450 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g280700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g38450
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g38450
>Glyma08g38450.1   sequence type=CDS   gene model=Glyma08g38450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCCACCACGCACGTGATGACCAACACCAACCCTACTCTCCCTCATCTACTACCCTCTTCACGCTCCCACTTCAATTCACGTCTTCTCTCACTGCCACCCACCAGAGTCGCCAATAAAGTTGGTGTCTTTGCCGAGCGTAGCAACAAAAGTAGAAGCACTTCCACCGCCGCCGTCGATTTCAGCGACCCTGATTGGAAAATCAAGTTCCAGGAAGATAGGGAAGCACGTTTCAGACTTCCCCATCTCACTGATATCTTTCCAGATGCTCCTCCGATTCCTTCCACGTTTTGTCTCAAAATGAGAACTCCGATTGATAGAGACTTTCCTGGTCATTATTCTTTGGATGAGGAGTGGCATGGATATATTAATAACAATGACAGAGTGCTTCTTAAGACAATATACTATTCGTCACCTACATCTGCTGGTGCAGAGTGCATTGATCCTGATTGTACATGGGTGGAACAATGGGTTCATCGAGCTGGGCCTCGTGAAAAGATATACTTTAAGCCAGAAGAAGTAAAGGCAGCAATTGTTACTTGTGGAGGGCTCTGCCCTGGTCTTAATGATGTCATCAGACAGATTGTAATCACCCTTGAAATATATGGTGTAAAAAACATCGTGGGGATTCCTTTTGGTTACCGGGGATTTTCTGACGAAGAATTGACAGAAGTGCCGCTGTCTAGAAAAGTAGTGCAGAATATTCATCTTTCTGGTGGAAGCCTGTTGGGAGTTTCACGAGGAGGACCTGGAGTCAGTGATATTGCGAACAGTCTGGAGAAAAGAGGGATCAACATGCTTTTTGTATTGGGTGGAAATGGCACACATGCTGGTGCCAATGCAATTCACCACGAGTGCCGCAAAAGACGGCTGAAGGTATCTGTAATTGGCGTGCCCAAAACTATAGACAATGATATTTTATTGATGGACAAAACTTTTGGCTTTGATACTGCTGTTGAAGAAGCACAAAGAGCAATAAATTCTGCCTACATTGAGGCACATAGTGCATATCATGGAATTGGCGTTGTGAAATTGATGGGCCGTAGCAGTGGATTCATAGCAATGCAAGCATCCCTATCTAGTGGACAGGTTGACATATGCCTGATCCCTGAGGTACCTTTCAATTTACATGGACCTCAAGGAGTATTGAGTCATCTCAAGTACCTTTTAGAAACAAAGGGATCAGCTGTAGTCTGTGCAGCAGAGGGAGCTGGACAGAATTTACTCCAAAAGACTAATGCTACAGATGCATCAGGAAATGTTGTATTTGGAGACATTGGCGTATATATTCAACAAGAGACAAAAAAATATTTCAAGGAGATTGGTGTTCATGCTGATGTGAAATATATTGATCCAACGTATATGATCCGTGCAATTCGAGCAAATGCATCAGATGGAATTCTGTGCACTGTACTTGGACAAAATGCTGTTCATGGTGCGTTTGCAGGATATAGTGGCATTACAGTAGGTTTATGTAACACCCACTATGCCTACTTTCCCATCCCCGAAGTGATATCTCATCCTAGGCTGGTGGACCCCAACAGTCGAATGTGGCATCGTTGCTTAACATCAACAGGTCAACCTGACTTCATCTAA
Predicted protein sequences of Glyma08g38450
>Glyma08g38450.1   sequence type=predicted peptide   gene model=Glyma08g38450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSTTHVMTNTNPTLPHLLPSSRSHFNSRLLSLPPTRVANKVGVFAERSNKSRSTSTAAVDFSDPDWKIKFQEDREARFRLPHLTDIFPDAPPIPSTFCLKMRTPIDRDFPGHYSLDEEWHGYINNNDRVLLKTIYYSSPTSAGAECIDPDCTWVEQWVHRAGPREKIYFKPEEVKAAIVTCGGLCPGLNDVIRQIVITLEIYGVKNIVGIPFGYRGFSDEELTEVPLSRKVVQNIHLSGGSLLGVSRGGPGVSDIANSLEKRGINMLFVLGGNGTHAGANAIHHECRKRRLKVSVIGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGVVKLMGRSSGFIAMQASLSSGQVDICLIPEVPFNLHGPQGVLSHLKYLLETKGSAVVCAAEGAGQNLLQKTNATDASGNVVFGDIGVYIQQETKKYFKEIGVHADVKYIDPTYMIRAIRANASDGILCTVLGQNAVHGAFAGYSGITVGLCNTHYAYFPIPEVISHPRLVDPNSRMWHRCLTSTGQPDFI*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo