SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G22480 | AT | Annotation by Michelle Graham. TAIR10: phosphofructokinase 5 | chr2:9545670-9548414 FORWARD LENGTH=537 | SoyBase | E_val: 0 | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0007010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0010498 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process | SoyBase | N/A | ISS |
| GO:0005945 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: 6-phosphofructokinase complex | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 6-phosphofructokinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG2440 | KOG | Pyrophosphate-dependent phosphofructo-1-kinase | JGI | ISS | |
| PTHR13697 | Panther | PHOSPHOFRUCTOKINASE | JGI | ISS | |
| PF00365 | PFAM | Phosphofructokinase | JGI | ISS | |
| UniRef100_G7LJ94 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 6-phosphofructokinase n=1 Tax=Medicago truncatula RepID=G7LJ94_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023383BD | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023383BD related cluster n=1 Tax=unknown RepID=UPI00023383BD | SoyBase | E_val: 0 | ISS |
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Glyma08g38450 not represented in the dataset |
Glyma08g38450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g280700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g38450.1 sequence type=CDS gene model=Glyma08g38450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTCCACCACGCACGTGATGACCAACACCAACCCTACTCTCCCTCATCTACTACCCTCTTCACGCTCCCACTTCAATTCACGTCTTCTCTCACTGCCACCCACCAGAGTCGCCAATAAAGTTGGTGTCTTTGCCGAGCGTAGCAACAAAAGTAGAAGCACTTCCACCGCCGCCGTCGATTTCAGCGACCCTGATTGGAAAATCAAGTTCCAGGAAGATAGGGAAGCACGTTTCAGACTTCCCCATCTCACTGATATCTTTCCAGATGCTCCTCCGATTCCTTCCACGTTTTGTCTCAAAATGAGAACTCCGATTGATAGAGACTTTCCTGGTCATTATTCTTTGGATGAGGAGTGGCATGGATATATTAATAACAATGACAGAGTGCTTCTTAAGACAATATACTATTCGTCACCTACATCTGCTGGTGCAGAGTGCATTGATCCTGATTGTACATGGGTGGAACAATGGGTTCATCGAGCTGGGCCTCGTGAAAAGATATACTTTAAGCCAGAAGAAGTAAAGGCAGCAATTGTTACTTGTGGAGGGCTCTGCCCTGGTCTTAATGATGTCATCAGACAGATTGTAATCACCCTTGAAATATATGGTGTAAAAAACATCGTGGGGATTCCTTTTGGTTACCGGGGATTTTCTGACGAAGAATTGACAGAAGTGCCGCTGTCTAGAAAAGTAGTGCAGAATATTCATCTTTCTGGTGGAAGCCTGTTGGGAGTTTCACGAGGAGGACCTGGAGTCAGTGATATTGCGAACAGTCTGGAGAAAAGAGGGATCAACATGCTTTTTGTATTGGGTGGAAATGGCACACATGCTGGTGCCAATGCAATTCACCACGAGTGCCGCAAAAGACGGCTGAAGGTATCTGTAATTGGCGTGCCCAAAACTATAGACAATGATATTTTATTGATGGACAAAACTTTTGGCTTTGATACTGCTGTTGAAGAAGCACAAAGAGCAATAAATTCTGCCTACATTGAGGCACATAGTGCATATCATGGAATTGGCGTTGTGAAATTGATGGGCCGTAGCAGTGGATTCATAGCAATGCAAGCATCCCTATCTAGTGGACAGGTTGACATATGCCTGATCCCTGAGGTACCTTTCAATTTACATGGACCTCAAGGAGTATTGAGTCATCTCAAGTACCTTTTAGAAACAAAGGGATCAGCTGTAGTCTGTGCAGCAGAGGGAGCTGGACAGAATTTACTCCAAAAGACTAATGCTACAGATGCATCAGGAAATGTTGTATTTGGAGACATTGGCGTATATATTCAACAAGAGACAAAAAAATATTTCAAGGAGATTGGTGTTCATGCTGATGTGAAATATATTGATCCAACGTATATGATCCGTGCAATTCGAGCAAATGCATCAGATGGAATTCTGTGCACTGTACTTGGACAAAATGCTGTTCATGGTGCGTTTGCAGGATATAGTGGCATTACAGTAGGTTTATGTAACACCCACTATGCCTACTTTCCCATCCCCGAAGTGATATCTCATCCTAGGCTGGTGGACCCCAACAGTCGAATGTGGCATCGTTGCTTAACATCAACAGGTCAACCTGACTTCATCTAA
>Glyma08g38450.1 sequence type=predicted peptide gene model=Glyma08g38450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSTTHVMTNTNPTLPHLLPSSRSHFNSRLLSLPPTRVANKVGVFAERSNKSRSTSTAAVDFSDPDWKIKFQEDREARFRLPHLTDIFPDAPPIPSTFCLKMRTPIDRDFPGHYSLDEEWHGYINNNDRVLLKTIYYSSPTSAGAECIDPDCTWVEQWVHRAGPREKIYFKPEEVKAAIVTCGGLCPGLNDVIRQIVITLEIYGVKNIVGIPFGYRGFSDEELTEVPLSRKVVQNIHLSGGSLLGVSRGGPGVSDIANSLEKRGINMLFVLGGNGTHAGANAIHHECRKRRLKVSVIGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGVVKLMGRSSGFIAMQASLSSGQVDICLIPEVPFNLHGPQGVLSHLKYLLETKGSAVVCAAEGAGQNLLQKTNATDASGNVVFGDIGVYIQQETKKYFKEIGVHADVKYIDPTYMIRAIRANASDGILCTVLGQNAVHGAFAGYSGITVGLCNTHYAYFPIPEVISHPRLVDPNSRMWHRCLTSTGQPDFI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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