|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT2G03710 | AT | Annotation by Michelle Graham. TAIR10: K-box region and MADS-box transcription factor family protein | chr2:1129622-1131242 FORWARD LENGTH=187 | SoyBase | E_val: 3.00E-30 | ISS |
GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
GO:0010076 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of floral meristem identity | SoyBase | N/A | ISS |
GO:0043481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light | SoyBase | N/A | ISS |
GO:0048440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carpel development | SoyBase | N/A | ISS |
GO:0048441 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal development | SoyBase | N/A | ISS |
GO:0048442 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sepal development | SoyBase | N/A | ISS |
GO:0048443 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stamen development | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
PTHR11945 | Panther | MADS BOX PROTEIN | JGI | ISS | |
PTHR11945:SF19 | Panther | MADS BOX PROTEIN | JGI | ISS | |
PF00319 | PFAM | SRF-type transcription factor (DNA-binding and dimerisation domain) | JGI | ISS | |
UniRef100_E9JPX3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: MADS-box protein AGL2 subfamily n=1 Tax=Coffea arabica RepID=E9JPX3_COFAR | SoyBase | E_val: 2.00E-29 | ISS |
UniRef100_I1K152 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K152_SOYBN | SoyBase | E_val: 3.00E-30 | ISS |
Glyma08g38386 not represented in the dataset |
Glyma08g38386 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g38386.1 sequence type=CDS gene model=Glyma08g38386 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAGGGGGATAATTGAATTGAAGAGGATAGAGAACAAAATTAACAGGGAAGTCACATTTTCTAAGAGAAGAAATGGATTGCTCAAGAAGGCTTATGAGTTCTCAGTACTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCTTGGCAAGCTTTATGAGTTCAACAGCACCTCAAGGTATTCATACATAGATATATAA
>Glyma08g38386.1 sequence type=predicted peptide gene model=Glyma08g38386 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRGIIELKRIENKINREVTFSKRRNGLLKKAYEFSVLCDAEVALIIFSNLGKLYEFNSTSRYSYIDI*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||