Report for Sequence Feature Glyma08g38330
Feature Type: gene_model
Chromosome: Gm08
Start: 37310301
stop: 37320032
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g38330
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G38090 AT
Annotation by Michelle Graham. TAIR10: Ribosomal protein S5 domain 2-like superfamily protein | chr4:17883975-17884702 REVERSE LENGTH=189
SoyBase E_val: 5.00E-71 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR16301 Panther
IMPACT-RELATED
JGI ISS
PF01205 PFAM
Uncharacterized protein family UPF0029
JGI ISS
UniRef100_B9DG41 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: AT4G38090 protein n=2 Tax=Arabidopsis thaliana RepID=B9DG41_ARATH
SoyBase E_val: 7.00E-68 ISS
UniRef100_I1KX88 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KX88_SOYBN
SoyBase E_val: 5.00E-138 ISS
Expression Patterns of Glyma08g38330
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g38330
Paralog Evidence Comments
Glyma18g29640 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g38330 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g280000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g38330
Coding sequences of Glyma08g38330
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g38330.3 sequence type=CDS gene model=Glyma08g38330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACAGATGATGGGGAAAGGTCTATGTTCCTTGACCTAAAGTCACTTGAAGGAGGAGTAGTTTCCTTTGAAGGCATAGGAAAGGAAAGATCACTGAAAGAGATTGAAGGGAGGAGGAGAAAGAAAAGGCCATGGTTTCCAACGAGAGAAATGCTAAATCCTCCTACAGGTGAAGACCTTACAGCAATCATAGTGCACACACACACCTTACAGATGCCTGTGGCGGTAACAATACCCAGTTATCAGCACCGCATCTACGCTTTACTCTTCTCCATCACCAAGGCCAAGAAAACCACCATGGCCAGCACCAACAGCAGCAATTCTGGTGGGGCCTTCACCACCATCCAAGAAAGGGTCACTTTCGAGAAAGAGATCAAAAAGAGCAAGTTCATTGCCATTGCTGGCCCCATCCCGGACGAAAAATCTGCCATGTCTTTCCTTTCCCAGGTACGGGATCCACGTGCCACCCACAATTGTTGGGCTTATAAGGTGGGGGATCAATACCGGTCCAATGATGACGGTGAGCCTTCAGGAACCGCTGGGAAACCAATACAAACTGCTATTGATTCTTCAGGAATCGATAGAGTAATGGTGGTTGTGATCAGATATTTTGGGGGTATCAAATTAGGCACCGGAGGATTGGCCAGGGCTTATGGAGGAGTTGCATCAGAATGCTTGAGAAACGCCCCAACTTGCTTTGTGAAAACTAAGATAATTTGGGGTATCAAATTAGGCACCGGAGGATTGGCCAGGGCATATGGAGGAGTTGCATCAGAATGCTTGAGAAACGCCCCAACTTGCTTTCTGAAAACTAAGGTGGTTATTTTCTTAGTCTGTTATGCATCTACAGTTTTAGGCTTTTAG
Predicted protein sequences of Glyma08g38330
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g38330.3 sequence type=predicted peptide gene model=Glyma08g38330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTDDGERSMFLDLKSLEGGVVSFEGIGKERSLKEIEGRRRKKRPWFPTREMLNPPTGEDLTAIIVHTHTLQMPVAVTIPSYQHRIYALLFSITKAKKTTMASTNSSNSGGAFTTIQERVTFEKEIKKSKFIAIAGPIPDEKSAMSFLSQVRDPRATHNCWAYKVGDQYRSNDDGEPSGTAGKPIQTAIDSSGIDRVMVVVIRYFGGIKLGTGGLARAYGGVASECLRNAPTCFVKTKIIWGIKLGTGGLARAYGGVASECLRNAPTCFLKTKVVIFLVCYASTVLGF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
