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Report for Sequence Feature Glyma08g38301

Feature Type:gene_model
Chromosome:Gm08
Start:37263456
stop:37295519
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g38301
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G10470AT Annotation by Michelle Graham. TAIR10: kinesin like protein for actin based chloroplast movement 1 | chr5:3290121-3297248 REVERSE LENGTH=1273 SoyBaseE_val: 0ISS
GO:0000910GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis SoyBaseN/AISS
GO:0000913GO-bp Annotation by Michelle Graham. GO Biological Process: preprophase band assembly SoyBaseN/AISS
GO:0007018GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule-based movement SoyBaseN/AISS
GO:0009903GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast avoidance movement SoyBaseN/AISS
GO:0009904GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast accumulation movement SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009504GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell plate SoyBaseN/AISS
GO:0009524GO-cc Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003777GO-mf Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008017GO-mf Annotation by Michelle Graham. GO Molecular Function: microtubule binding SoyBaseN/AISS
KOG0239 KOG Kinesin (KAR3 subfamily) JGI ISS
PTHR24115Panther FAMILY NOT NAMED JGI ISS
PTHR24115:SF244Panther JGI ISS
PF00225PFAM Kinesin motor domain JGI ISS
UniRef100_Q9LX99UniRef Annotation by Michelle Graham. Most informative UniRef hit: Geminivirus Rep-interacting motor protein n=1 Tax=Arabidopsis thaliana RepID=GRIMP_ARATH SoyBaseE_val: 0ISS
UniRef100_UPI0002338584UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338584 related cluster n=1 Tax=unknown RepID=UPI0002338584 SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g38301
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g38301 not represented in the dataset
Glyma08g38301 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g38301
ParalogEvidenceComments
Glyma18g29560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g38301 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g279800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g38301
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g38301
>Glyma08g38301.1   sequence type=CDS   gene model=Glyma08g38301   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAACAAAAGAACCGGTGGAGCTGGGACGTCGCCGGCTTCGACCCGTGGAAGTCGTCGCCTCCGCCGCCGCAACCGGCAGCGGAGCACGGTGATCGGAAACCTAGTGCGCCGTTGGTGCGACGGTACTCCATTTCGGCCACGTCGGTTCTTCCGCAACCGAAGCACGCTGTGGCTTTCAAGCTTCAGCGGTTGAAGGACAAAGTCAAGCTTGCTAAAGAAGACTATTTGCAATTAAGACAAGAAGCAAGTGAACTTCAAGAATATTCAAATGCAAAACTTGACCGAGTTACACGATATCTAGGTGTTCTTGCAGAGAAAACCCGCAAGCTAGATCAAGTCACCCTTGAAACTGAAGCAAGAATATCTCCAGTGATCAATGAGAAAAGAAGATTATTCAATGATTTATTAACATCTAAAGGAAACATACGAGTATTCTGCCGTACAAGGCCATTATTTGAAGATGAAGGTCCTTCAGTTATTGAATTTCCTGATGATTATACCATTTGTGTAAATACTGGTGATGAATCCTTGTCTAATGCCAAGAAAGATTTTAAATTTGACCGAGTTTATGGACCTCATGTTGGTCAAGCTGAGTTATTCAGTGATGTTCAACCACTAGTGCAGTCAGCTTTGGATGGATATAATGTTTCCATATTTGCATATGGACAAACCCATTCTGGAAAGACACACACTATGGAAGGATCAAGCTATGATCGGGGTTTATATGCTCGTTGTTTTGAGGAGTTGTTTGATTTAGCCAATTTAGATACAACCTCTACTTCTCGATATAAATTCTGTGTTACAGTTTGTGAGCTATATAACGAACAGACAAGAGATCTACTTTTGGAGGCAGGGAAAAGCACGCCTAAACTCTGCTTGGGATCACCTGAATGTTTCGTAGAGCTGGTGCAGGAAAACATTGATAGCCCTCTTGAGTTTTCTGCAGTTTTAAAAAGTGCACTGCAGACTCGGGAAAATGATTTATCAAAGAATAACATATCTCATTTGATTGTCACGATACACATATTTTATAACAATTTGATCACCGGTGAAAACTCCTATAGTAAACTCTCTCTGGTTGATTTAGCTGGAAGTGAAGGCTTGATAACAGAAGATGATAGTGGCGACCGTGTCACAGATTTGCTGCATGTCATGAAGTCTCTTTCAGCGTTGGGAGATGTTTTATCTTCTTTAACATCAAAGAAGGATATTATTCCTTATGAAAATTCGCTGCTAACAAAACTGCTTGCAGATTCGCTTGGTGGGAGTTCAAAAACTTTGATGATTGTGAATGTGTGTCCAAGTATTTCAAATTTATCTGAGACATTGTCGTCTGTCAATTTCTCTGCTAGAGCTCGAAATTCTACATTAAGCCTTGGAAACCAAGACACAATTAAAAAGTGGAGAGATGTTGCAAATGATGCGCGAAAGGAGCTGTATGAGAAAGAAAAAGAAATCCATGATCTAAAGCAAGAGGGTTTGGAACTCAAGCAAGCGCTTAAAGATGCAAATGATCAGTGCATTCTGCTCTTCAATGAAGTGCAGAAGGCACGGAAAGTTTCTTCTGTATTGCAAACTGATTTAAAGTCGGAACATGTTTTGCTGTCAGATAAACACAATATAGAGAAAGAACAAAATAATCAGCTTAGAAATCAAGTTGCTCAACTTTTACGGTTAGAGCAGGATCAAAAATTGCAGATACAAGAGCAAGATTCAACCATCCAAAGTTTGCAGGCTAAAATTAGAACTCTTGAAACTCAACTCAATGAAGCTATTAAATCTAGTGAATCTAGGTCAACATTTGTCTCCGAGCCAGAGTTTGCTGATCAATCCAATTCCAGACCAACTGGTGATGGCATAGACTCTTCTGCAGTAACCAAAAAACTAGAAGAGGAACTCAAGAAACGTGATGCACTGATTGAGAGGTTGCATGAAGAAAATGAGAAATTGTTTGATAGATTAACTCAGAAAGCATCTACGGCCGGATCACCTAAGTTGTCAAGTCCATTAGCCCATGGATCAGCAAATGTTCAGCCTCGGGATATTGGAAGGAATGGCACCAACAACAATACAAGTTCTCGTTCTATGGATGTTCTTCCTTCACCTTTGGCCACTGATAAAAATGATGGCACGGTTGCTCTAGTTAAAACTGGCTCTGAAATAGTTAAGACTACCCCTGCCGGTGAATATCTGACTGCTGCCCTGAATGATTTCGATCCAGATCAATATGAAGGGCATGCTGCTATATCTGATGGTGCAAACAAGCTTTTGATGCTGGTTCTGGCTGCTGTCATCAAAGCTGGTGCCTCTAGAGAACATGAGATACTCGCTGAAATTAGGGATTCTGTTTTCTCTTTTATTAGAAAGATGGAACCAAAACAAGTAATGGACACCATGCTTGTTTCCCGTGTTAGAATTCTGTATATAAGATCTTTGCTTGCTAGATCCCCAGAGTTGCAATCAATTAAGGTTTTGCCAGTTGAGTGCTTTCTCGAAAAGACTAATACTGGGCGCAGTAGAAGTTCCAGCCGAGGGAGTAGTCCTGGTAGGTCTCCTGTGTTATATGTTGATGAGCAGATCCAGGGATTTAAAGTGAATCTAAAGCCAGAAAAGAAATCCAAATTTTCATCTGTTGTGCTGAAGATACGTGGTATTGATGAGGACATCTGGAGACAGCAAGTAACTGGTGGAAAGCTTAGGGAAATTACTGAGGAGGCCAAAAGTTTTGCAATTGGGAACAGGGCTCTTGCTGCACTATTTGTACATACACCAGCGGGTGAGCTGCAGCGTCAAATTAGATCCTGGCTTGCAGAGAGTTTTGAGTTTCTATCTTTAACGGGAGAAGATGCATCAGGGGGGTCAACTGGTCAGTTGGAACTTCTTTCAACTGCAATTATGGATGGTTGGATGGCGGGACTTGGTGCTGCTCTTCCTCCCCACACTGATGCCCTTGGCCAGCTATTATTTGAATATTCAAAACGTGTCTATACTTCTCAATTACAACACTTGAAGGATATTGCTGGTACCTTGGCAACAGAGGAGGCTGAAGATGCAGCCCAAGTAGCGAAGCTACGTTCAGCTCTAGAGTCGGTTGATCATAAAAGAAGAAAGATTTTGCAACAAATGAAAAGTGATATAGCTTTATTGACGTTAGAAAATGGTGGTTTCCCTATTCAAAATCCTTCTACTGCAGCTGAAGATGCGCGATTAGCATCTCTTATTTCGCTTGATAGCATATTAAAGCAAATCAAGGATATGACAAGACTTTCTTCCGTGAACATCTTGACCAAAAGTAAGAAAAAAACGATGCTTGCTTCTCTTAATGAATTAACAGAACAGATGCCTTCGCTTCTTGAAATTGATCATCCATGTGCTCAGAGGCACATCGCAGATGCTCGCTACATGGTTGAGTCAATTCCTGAAGAAGATGACCCCATTCAAGATATATCTCATGATCGCATGCCATCAACAGATCTGGGCTCTGGATCTGAAACTGACGTTACACAGTGGAATGTACTCCAATTTAATACTGGCTCGACCTCACCATTTATAATAAAATGTGGTGCAAACTCTAATTCAGAACTAGTCATTAAAGCCGACGCACGAGTTCAGGAACCAAAAGGTGGTGAAATTGTGAGGGTTGCCCCTAGACCCTCCGTTTTGGACAATATGAGCTTGGATGAAATGAAACAAATATTTAATGAACTACCCGAGGCTCTAAGCTTGCTGGCTCTAGCAAGGACTGCAGATGGAACTCGGGCACGATATTCTAGATTATACAGGACCTTGGCTACTAAGGTTCCATCGCTTAAGGATTTGGTCGGTGAGCTCGAAAAAGGGGCTGCACTCAGAGATGTGAGAACATGA
Predicted protein sequences of Glyma08g38301
>Glyma08g38301.1   sequence type=predicted peptide   gene model=Glyma08g38301   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEQKNRWSWDVAGFDPWKSSPPPPQPAAEHGDRKPSAPLVRRYSISATSVLPQPKHAVAFKLQRLKDKVKLAKEDYLQLRQEASELQEYSNAKLDRVTRYLGVLAEKTRKLDQVTLETEARISPVINEKRRLFNDLLTSKGNIRVFCRTRPLFEDEGPSVIEFPDDYTICVNTGDESLSNAKKDFKFDRVYGPHVGQAELFSDVQPLVQSALDGYNVSIFAYGQTHSGKTHTMEGSSYDRGLYARCFEELFDLANLDTTSTSRYKFCVTVCELYNEQTRDLLLEAGKSTPKLCLGSPECFVELVQENIDSPLEFSAVLKSALQTRENDLSKNNISHLIVTIHIFYNNLITGENSYSKLSLVDLAGSEGLITEDDSGDRVTDLLHVMKSLSALGDVLSSLTSKKDIIPYENSLLTKLLADSLGGSSKTLMIVNVCPSISNLSETLSSVNFSARARNSTLSLGNQDTIKKWRDVANDARKELYEKEKEIHDLKQEGLELKQALKDANDQCILLFNEVQKARKVSSVLQTDLKSEHVLLSDKHNIEKEQNNQLRNQVAQLLRLEQDQKLQIQEQDSTIQSLQAKIRTLETQLNEAIKSSESRSTFVSEPEFADQSNSRPTGDGIDSSAVTKKLEEELKKRDALIERLHEENEKLFDRLTQKASTAGSPKLSSPLAHGSANVQPRDIGRNGTNNNTSSRSMDVLPSPLATDKNDGTVALVKTGSEIVKTTPAGEYLTAALNDFDPDQYEGHAAISDGANKLLMLVLAAVIKAGASREHEILAEIRDSVFSFIRKMEPKQVMDTMLVSRVRILYIRSLLARSPELQSIKVLPVECFLEKTNTGRSRSSSRGSSPGRSPVLYVDEQIQGFKVNLKPEKKSKFSSVVLKIRGIDEDIWRQQVTGGKLREITEEAKSFAIGNRALAALFVHTPAGELQRQIRSWLAESFEFLSLTGEDASGGSTGQLELLSTAIMDGWMAGLGAALPPHTDALGQLLFEYSKRVYTSQLQHLKDIAGTLATEEAEDAAQVAKLRSALESVDHKRRKILQQMKSDIALLTLENGGFPIQNPSTAAEDARLASLISLDSILKQIKDMTRLSSVNILTKSKKKTMLASLNELTEQMPSLLEIDHPCAQRHIADARYMVESIPEEDDPIQDISHDRMPSTDLGSGSETDVTQWNVLQFNTGSTSPFIIKCGANSNSELVIKADARVQEPKGGEIVRVAPRPSVLDNMSLDEMKQIFNELPEALSLLALARTADGTRARYSRLYRTLATKVPSLKDLVGELEKGAALRDVRT*






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