Glyma08g38270 - SoyBase

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Report for Sequence Feature Glyma08g38270

Feature Type:	gene_model
Chromosome:	Gm08
Start:	37207537
stop:	37211954
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g38270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38070	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr4:17876535-17882569 FORWARD LENGTH=1513	SoyBase	E_val: 5.00E-126	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR18937	Panther	STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	JGI		ISS
PTHR18937:SF58	Panther	MYOSIN HEAVY CHAIN - RELATED	JGI		ISS
UniRef100_B9T612	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9T612_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI00023383BA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023383BA related cluster n=1 Tax=unknown RepID=UPI00023383BA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g38270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g38270

Paralog	Evidence	Comments
Glyma18g29510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g38270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g279600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g38270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g38270

Limit To All Plant Sequences

>Glyma08g38270.2   sequence type=CDS   gene model=Glyma08g38270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGGTTTATGAAGAGCTCGATGAAGCAAAAGCAGAAATTGAGGAACTCAAGGCACAACTAAGAGCCAAAACAGATTCCCTTGAGAACTTGAAGAAATCCCATAATGCACAGGTCAATCAGATACAGGAAGCAAGGTTCAAAGCTGAGAATCTGAACCAAAAACTTCTTCAACAAGCTGATGAAATCTCTGAGGCAAAGCTGGTTTGTGAAGATCTCAAAGGGAATCTGAATAAAAAGGAGTCCATCATCAAACATCTCAGTGCCGCAAATGATAGACTTCTAGTGGATTGTGATGACAAGTTCAAAAAGTGGGAAGACGAAAAAAGAGGGTTGGTGTTGGCCTTAGAAGAGGCAAATGAGAAGACACAGAACCAGGAACAACAGATTCATCAATACAAACAAGAGATTGAAAGAATGAAAGGCTGTCTTTCAGTTTCAGAGAAGAAGTGTTTGGAAACAAAGAAAAATTTAAAAGCATCCAAAGAACTAAGAGAAAGAGATGACATGTTCCAAAAGTTAGAGGAGGAATGCATGAAGGTGGAAGATCAATTAAAATGGAAGAAGGAACAGTTTAAGCATCTTGAAGAAGCACATGAAAAAGTCCAAAACCAGTTTAAGGCTAGTAAGAAAGAATGGGAGATGGAAAAATCTACATTGCTTGATGGGATTTCTTCACTTCAGAATAGGTTAGACTCTCAGATCAGAATATCAGAGGATTTACAGCATCAGTTACACACTTGCCACCAAGTTCTTGCTCATGTAGAAAGCCAGAAAAAGCGTCTGGAATTTGAAGTTTCAAATCTTAAGGTGCAGCTTGATAATGCTAGCAATGAGTACCAGGATGCTAGGTTACAGCTAGATTGCTTAAATACTCACCGCGACAAAGATATTGCAGATTTGAGATATTTGCTAAAAACAAAAGAGGCATATCATAAAGAATCAAAGTACAGGATGGAGAAGCTAGAGCAAGAAAATCAAGAGCTGTGGATGTCCCTCAAAGAACTCCAGGAAGCTCAAATTCAAGAAGCAGGAACCTCATATTCACAGTCAAAGTTGCGGTCCAAGCTCAGAAATTTGGAACAAACTCATAAAGAGTGTGCCTCTACTTTAAAGGCTAAAGAAGCTGAATGGAACTTTAAGCTAAAACAGTTGACAGCAGACCTGAATAGATGTCGGTCTGATTTGGAAATTAAAACTGAATCAGTGGAAGACCTCCAGATGGAGTTAGAAAGCTCTCAATCTTTAGCCATAGAGATGAAGTTATTGAATGAGGAGATGTCTGTGATGTTGATTGTGTTGAAACAGGGAATTTCTGAGGCTCAATTGAAGCTTGCAAGCCATAAAGATGAGATGAATCTTATCAACAAAGCTAGTGAAGAGAAGACTTTTCAACTGATGTGGCAGTTGGAGATGAAGGACGCTGCTTTGATCAATGCCCAGAAAAGCATAAATGAAGAACGTGAGATAGCAGCACGTTTGATGAGGCAGGTTGAGTCTTCTGTATCCAACAATGAACTGCAGCATGCACTGCAAAATGAACTTGATAGGCACAAGGAAATGCTGGAGGAATCAACAATGAGTCAGCTGATCCTCAAAGAGAAGGTTTGGCAGATGGAATGTAACTTTAAAGAACAGTTGGAGATGAAAGATGCTGCTTTGACCAGTGCACAGAAAAGCATAAAGGAAGAACGTGAGATAGCAGCATGTTTAAGGAGGCAGGTTGAGTCTTATGCATCCAACATTGAACTGCAGCATTCACTGCAAAATGAAGTTGATGATAGGCAGAAGGAAATGCTGGAGGAGTCAACAACGAGTCAGCTGATCCTCAAAGAGAAGGTTTTGCAGATGGAATGTAACTTTAAAGAACAGCTTAAAGAAATCCATGATGCTTTAGACAGTGTAATCATTGAATTGGATGAAACAATATGTGAAAGAAATGAAAAGGAATTTGAATTGCAAATATGGAAGTCAATTGTTGAGCGCTTGAAGAATGATCTTGAAGAAAATCATGTACTGCGTAGAGAACTGGAAACTTCACTTCTTGCACAAGTAGATTTTGGTGAAAGCCTCAAGCAAGAAAAAGTTAGCTTGGTTTATAAGTTGGAAGAGAAAGAGAGGAGCCTAGATTATCTGCAGCGACATGTTGAGCTATTGGAACGTGAGCTAAGAGAAAGGGGAGAATCAGAGGTGTCCTCTGAGTCTGATAATGTCAGGTATCTCCAGATCATAGCGGAGAAGGACAAGATTCTAGAAGAGCTCCAGAAAGAGGTTGTTTGGCTGGAACAAGAATCATTCAAAAAAGAATTTGAAAGTGCTGTGATTGAGAAAGGCACAATGGAAAGAACCTTTGAGCATGAGAAAGATTATCTTATCCAGATTATGAAAGGAAAAGACAGGAGAATGGATGAACTCATGCAGCAGGTGACTTCACTGGAGCAACAGTTCACTAACTCATTGACCACCTTTTCTTCACAACTTGCTGAGAAACAGGCTGAAATTAACCTCATCCGTGATGCTTCTGACAAGATCACAGCATCTCAGATTCTAGCTGCTCTTGAAATTAAAGAGAAGAAGTTGATGGTAGTGGAACTTGAGGATGATATTCATGCTATACAGCAGAAACTGAAATTGCAGGAGGAAAAGTGGAGCCGATCAGAGCAACTTGCATTGGATACTGAAGTAGAATTGGCTGCAAAACAGGTAAAGGCAATGGAGTTGAATGATCAAATGGAGACTACTAAGCTAAGAAAACCAGATGCTTTGCTTCAGAAACTACAGATGGAGAATAGAAATTTACTTGATAGTGCCACGAGACTGTCATCAGAAAGGGAAAACTTGTTGGCTTCTGTTCAGGAATTCAGTGATAAAATCTGTGAGTTCTCTACTGCAGACACGATACTAATGGACAAGTTGAGAAGCATGGTGCAGTCTTTTGAGAATGGTTGTCCAGTAATGATTTTGAAAAAGGATGATGGTTTCCTTGTAAAAGAGAATATGTTGGTTCAGTCTCCCACGAGGATAAAGAAACTTGAAGCCAATTCTGAAACTAGATCACCATTCAAGGAGCTAAATTTGCTAGAAGAATAG

Predicted protein sequences of Glyma08g38270

Limit To All Plant Sequences

>Glyma08g38270.2   sequence type=predicted peptide   gene model=Glyma08g38270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKVYEELDEAKAEIEELKAQLRAKTDSLENLKKSHNAQVNQIQEARFKAENLNQKLLQQADEISEAKLVCEDLKGNLNKKESIIKHLSAANDRLLVDCDDKFKKWEDEKRGLVLALEEANEKTQNQEQQIHQYKQEIERMKGCLSVSEKKCLETKKNLKASKELRERDDMFQKLEEECMKVEDQLKWKKEQFKHLEEAHEKVQNQFKASKKEWEMEKSTLLDGISSLQNRLDSQIRISEDLQHQLHTCHQVLAHVESQKKRLEFEVSNLKVQLDNASNEYQDARLQLDCLNTHRDKDIADLRYLLKTKEAYHKESKYRMEKLEQENQELWMSLKELQEAQIQEAGTSYSQSKLRSKLRNLEQTHKECASTLKAKEAEWNFKLKQLTADLNRCRSDLEIKTESVEDLQMELESSQSLAIEMKLLNEEMSVMLIVLKQGISEAQLKLASHKDEMNLINKASEEKTFQLMWQLEMKDAALINAQKSINEEREIAARLMRQVESSVSNNELQHALQNELDRHKEMLEESTMSQLILKEKVWQMECNFKEQLEMKDAALTSAQKSIKEEREIAACLRRQVESYASNIELQHSLQNEVDDRQKEMLEESTTSQLILKEKVLQMECNFKEQLKEIHDALDSVIIELDETICERNEKEFELQIWKSIVERLKNDLEENHVLRRELETSLLAQVDFGESLKQEKVSLVYKLEEKERSLDYLQRHVELLERELRERGESEVSSESDNVRYLQIIAEKDKILEELQKEVVWLEQESFKKEFESAVIEKGTMERTFEHEKDYLIQIMKGKDRRMDELMQQVTSLEQQFTNSLTTFSSQLAEKQAEINLIRDASDKITASQILAALEIKEKKLMVVELEDDIHAIQQKLKLQEEKWSRSEQLALDTEVELAAKQVKAMELNDQMETTKLRKPDALLQKLQMENRNLLDSATRLSSERENLLASVQEFSDKICEFSTADTILMDKLRSMVQSFENGCPVMILKKDDGFLVKENMLVQSPTRIKKLEANSETRSPFKELNLLEE*

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