Glyma08g38220 - SoyBase

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Report for Sequence Feature Glyma08g38220

Feature Type:	gene_model
Chromosome:	Gm08
Start:	37130328
stop:	37134312
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g38220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22560	AT	Annotation by Michelle Graham. TAIR10: Kinase interacting (KIP1-like) family protein \| chr2:9585892-9588838 FORWARD LENGTH=947	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF07765	PFAM	KIP1-like protein	JGI		ISS
UniRef100_G7LIK6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Geminivirus Rep-interacting motor protein (Fragment) n=1 Tax=Medicago truncatula RepID=G7LIK6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023383B7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023383B7 related cluster n=1 Tax=unknown RepID=UPI00023383B7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g38220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g38220

Paralog	Evidence	Comments
Glyma18g29480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g38220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g279300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g38220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g38220

Limit To All Plant Sequences

>Glyma08g38220.1   sequence type=CDS   gene model=Glyma08g38220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCAGAGAGCTGCAAGCAATGCATATTCATGGTGGTGGGCTAGCCACATCAGAACAAAGCAATCAAAATGGATGGAACAAAACCTCCAAGATATGGAGGAAAAGGTGCACGCTGTTTTGAAGCTCCTAGAGGAAGAGGGGGATTCCTTTGCCAAGAGAGCAGAAATGTATTATAAAAGGAGACCAGAGCTGATAAACTTTGTGGAAGAATCATTCAGGGCATACCGTTCTTTAGCGGATAGGTATGATCACATATCAACTGAGTTGCAAAATGCAAACAACACTATCGCTTCTGTGTGCCCGGATCAAGTCCCATATATGGATGATGATGATGAGGATTCGCCTAGACCGAAAACCCCGAGAAAAATGCCAGAAGGGCACAAGCCAAATATTCCTAATGTTCCAAAGGTTCCAAAGCCTCCACTTAGAGATTTAAAAAGTGTCATAACAACAGCCACAAAGAAACTCAATCCCAAGAAGGTAGTAGCATCTGCAGCTGTGGCTCCTAAAGTTCAAAAATCTGGATTGAGCAGAAAGGAGGCGCTTGCAGAGGTTGACAAGCTGCAGAAAGAGATTCTGGCATTGCAAACAGTGAAAGAGTTTGTGAAGAGTTCTTATGATAATGCCATTGCCAGGTACTGGGATACTGATCAGCAGATCCAGGGATTACAAGAGAAAGTGTCCAATTTGCAAGATGAACTTGGAGAAGGTGTTGCTATTGATGACGAGGAAGCACGGTGTTTGATGGCAGCAGCAGCTCTTAAGTCATGCCAAGAGACATTGTCACAGTTGGAACTGAAACAGGCTATATCACTTGATGAGACGAAAATTGAGACCAAAAGGGTAAAGGAAGCGAGGGAAAAGTTAAGTTCTCTCATGAATGAGTTCAATTATGATCAAATCAATTCCAAAGAGCCAAGGGCAAAAGGAGGTGTAAAAGAAATAGCTGGAACAAAGGACTTGGATGTAGATGTGGACAAAATGAATCAGCAGAGACAGGAGTTGCAGCAATTGCAGGAGAAAATAAAAGAACACTTTGAGGCTGGATCCTATTCAACTCTAACAGTGAAAGATATGGCAGAAAAGATTGATTCACTTGTGAACAAAGTTATCAACTTAGAAAGTGCAGTTTCTTCCCAGACAGCTCTTGTAAAGAGATTAAAAGTAGAAACTGATGAACTTCATACCGTGGTTCGAACTCTAGAAGGTGATAAGGAAGGCTTGATCAGTGATAAAGCTAAATTGAACGAGCAACTGAGAGAAATGGATGATAAGCTGCGTGAGGTACAGGATCTAAACCAAGTTGTTGAAGATCAGAATACCAACCTCCAAACCCATTTCACTGAAGCACATTGTAATCTAGATCATCTGTCGGAGAAAGTCCAAAAGGTGAAGCCAGATCTGGTTGCGGAAATATCACTAACACAAAGGAAGTCATCAAGGGAAGCAGAATCTGAACATGTTCCTAAAGGACTAGATGCATTGAATCAAGACAGTGTGCTATTGAATGAGGGGCATAAGGTCAATGCAACAATAGAAGATACTGTGAATTCAGACAAGGAGCTTATGGTTGCAGAAGTGGCAAAAGACGGTGTAATTCCAGAAAACAAGCCTAATAATGTCACAGGTTCACCAGAAATGAATGAGGAAACCCCAGTGGAAAACAAATCTCCAATAGAGTTGAAAGAAAGAGAGAAGTCCCCGGATTCTAACTACAGTGATGTTACAGAATCAACAGATGCTTTGAAAACTAGTAGCGGAAATAGAATGACAAAAGAAGATGAGTCTGATTGGCAGCAATTGTTGAATGGAATGCAGGATAGGGAAAAGGCTTTGCTGTCAGAGTATACTAATGCTCTTCAAAATTATGATGATATGAAGATCAGACTAGCTGAAATAGAGAAGAAAAATCAAGATGCCCTCTTTGAGTCATCTTTGCAGTTGAAAGAACTGAAGACTGCTAATGCCTTGAAAGATGAAGAAATTAGACTCCTACGTCAGAAACTAGGTGTCCTGCAGAAAAGCTTGGAGGGAATGGAGGATTTGGGAGAGTTAACTTCAGTGCAGCCGGCACCACCGGAGCAACATGACATTGAAGAATTTTTAAAAGTTGAAGAACCTGAATCTACAACATCAGCCATTGAAGAGAAGTTCCGGATGAGCATTGATGAACTTCTAGAGGAGAACCTAGACTTCTGGATGAAATTCAGTACTTCTTTTACTGGGATACAGAAATTTGAAACCACTATAAAAGATTTGCTGATTGAGGTATCAAGAATTGAGGAAAAATGTAAATCATCAGAAGGCAGTAGTAGCGTGAAATATTCATTGAAATCAGACGCAAGACCACTTTATAAACACCTTGCGGAGATTCTAAATGAACTAACAATGTGGTTGGAAAACAGTGCATTGTTGAAGGAAGAACTTCAATGTAGATTCTCTTCCTTGTGTGAAATCCAAGAAGAGATAACTACGGCACTGAAAGCCAGTGCTGAAGATGATGACTTCAAGTTCACCAGCTATCAAGCAGCCAAGTTCCAAGGCGAGGTTTTGAACATGAAACAAGAGAACAACAGAGTTGCTGATGAACTTCAAGCAGGTCTAGATCTAGTAACATCTCTCCAACTTGATGGTGAGAAGGCTCTTGCGAAGATGAATGAGCGATTTGGGCTCTCAAATTCTAACAAAAGCCAGAGATCTTCAGATTCCCAGAACTCAGTTCCTCTCAGGTCATTCATCTTTGGTGTCAAACCAAAGAAACAAAAACAATCAATCTTCTCCTGCATGACCCCTGGAATGCATAGGAAATACCGTGGTCATAGAGGATAA

Predicted protein sequences of Glyma08g38220

Limit To All Plant Sequences

>Glyma08g38220.1   sequence type=predicted peptide   gene model=Glyma08g38220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQRAASNAYSWWWASHIRTKQSKWMEQNLQDMEEKVHAVLKLLEEEGDSFAKRAEMYYKRRPELINFVEESFRAYRSLADRYDHISTELQNANNTIASVCPDQVPYMDDDDEDSPRPKTPRKMPEGHKPNIPNVPKVPKPPLRDLKSVITTATKKLNPKKVVASAAVAPKVQKSGLSRKEALAEVDKLQKEILALQTVKEFVKSSYDNAIARYWDTDQQIQGLQEKVSNLQDELGEGVAIDDEEARCLMAAAALKSCQETLSQLELKQAISLDETKIETKRVKEAREKLSSLMNEFNYDQINSKEPRAKGGVKEIAGTKDLDVDVDKMNQQRQELQQLQEKIKEHFEAGSYSTLTVKDMAEKIDSLVNKVINLESAVSSQTALVKRLKVETDELHTVVRTLEGDKEGLISDKAKLNEQLREMDDKLREVQDLNQVVEDQNTNLQTHFTEAHCNLDHLSEKVQKVKPDLVAEISLTQRKSSREAESEHVPKGLDALNQDSVLLNEGHKVNATIEDTVNSDKELMVAEVAKDGVIPENKPNNVTGSPEMNEETPVENKSPIELKEREKSPDSNYSDVTESTDALKTSSGNRMTKEDESDWQQLLNGMQDREKALLSEYTNALQNYDDMKIRLAEIEKKNQDALFESSLQLKELKTANALKDEEIRLLRQKLGVLQKSLEGMEDLGELTSVQPAPPEQHDIEEFLKVEEPESTTSAIEEKFRMSIDELLEENLDFWMKFSTSFTGIQKFETTIKDLLIEVSRIEEKCKSSEGSSSVKYSLKSDARPLYKHLAEILNELTMWLENSALLKEELQCRFSSLCEIQEEITTALKASAEDDDFKFTSYQAAKFQGEVLNMKQENNRVADELQAGLDLVTSLQLDGEKALAKMNERFGLSNSNKSQRSSDSQNSVPLRSFIFGVKPKKQKQSIFSCMTPGMHRKYRGHRG*

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