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Report for Sequence Feature Glyma08g38201

Feature Type:gene_model
Chromosome:Gm08
Start:37095164
stop:37106507
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g38201
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38050AT Annotation by Michelle Graham. TAIR10: Xanthine/uracil permease family protein | chr4:17869529-17872461 REVERSE LENGTH=709 SoyBaseE_val: 0ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0022857GO-mf Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity SoyBaseN/AISS
KOG1292 KOG Xanthine/uracil transporters JGI ISS
PTHR11119Panther PURINE PERMEASE JGI ISS
PTHR11119:SF8Panther SODIUM-DEPENDENT VITAMIN C TRANSPORTER JGI ISS
PF00860PFAM Permease family JGI ISS
UniRef100_G7JWD8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nucleobase-ascorbate transporter n=1 Tax=Medicago truncatula RepID=G7JWD8_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1N1U9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N1U9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g38201
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g38201 not represented in the dataset
Glyma08g38201 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g38201 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g279100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g38201
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g38201
>Glyma08g38201.1   sequence type=CDS   gene model=Glyma08g38201   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACCGGGTCGAGTTCGGAGTTCTTAGATAAGGGGAAAGCTATGAGGGGTGGCACTGGCAAGAGACATGATGTTGTTAGTGATACAAAAGTTGAGCCTTTTGTGGCAAGAAGTGATCATAATCCTAAAGAGTTGAAGTCATGGGCAAAGAGAACTGGGTTTGTGTCTAATTACTCTGGGGAAGTTGGGACTAGTGCCAGTGAGAATTTTGATAGTGTTGGGAAAATTGGGGATGAGGCTGCTTTGGTTTTGGTTGGTGATGGTGATAAGAAAATTGGGTTAAGAGTGAATGGTGATGCTTATGGAATGACGGTGAGTACAAATCGCAATATTAATAGTCATGGAGTTTCTGCAGTTGCTCCTTTGCCAGAGCAGAAGAAGGAAAAAGAAGGGATAGTTGAAGACGTCAAGGTGAATCATTTTCCAGAGGGGGAGGAACCTGCTAGTAGAGGGTGGCAGGGAGCATCTGGATTGAAATCAATAATAGTCTGTTCAATTATAAGCTGGAGATTGATCCTCAAGTTTAAGTCCATGCATTATGAATTTTATGATGGAAAAACAAGCTACCACAATAACAAACTCAATAACAGACACTACCTTTCATTGATTGGCTCGCTAGTATTAATCCCATTAATCATGGTACTAACCATGGGTGGAACAGATAACGATACTGCTAATGTAATTTCCACAATGCTGTTTCTTTCCGGTGTCACAACGATACTGCATTGCTACTTTGGCACCCAACTATCTTTAGTTCAAGGGAGCTCGTTCGTGTATTTGGCACCGGCATTGGTTATCATAAATGCTGAAGAATTTCGTAATCTCACACATCATAAATGTAGGCACATAATGACGGAACTCCAGGGAGCTATAATTGTTGGCTCAATATTCCAATGTATCCTGGGACTTAGTGGTTTGATGTTTCTTCTTCTCAGGATAATCAACCCAATTGTGGTGGCTCCAACTGTTGCTGCTGTAGGTTTGGCATTCTTCAGCTATGGCTTTCCACAAGCTGGAACTTGCATGAAAATTAGCATTCCGCAGATAGCATTAGTTCTATTATTCACACTGCATCTTCGAGGAATATCTATCTTTGGCCACCACACATTTCGAATTTGTGCTGTTCCCTTGACAGTTACATTAACTTGGATATATGCGTCGTTTTTAACAGCTGGGGGAGGATATAACTACAAAGGATGCAATCCCAATATCCCAAGTTCAAACATTTTGATTGGTGCATGCAGAAAGCATGCTTATACCATGAAACATTGCAGGACTGATATATCCAATGCACTGTTAACTTCTGCATGGCTCAGAATACTTTATCCTTTACAATGGGGTTTCCCTATTTTCCATTTCAGGACTTGCATAATGATGGCCATAGTGTCGCTGGCTGCCTCTGTGGATTCAGTTGGAACATATTATTCTGCATCTCTGCGAGTCAATTTGAGGCCTCTAAGTCCTGGAGTCGTGAGCCGAGGAATTGCATTGGAGGGTCTCTATAGTATATTGGCTGGTCTTTGGGGTTCGGGAACTGGGTCAACCACCTTGACAGAAAATGTTCAGACAATTGACACAACAAAGGTGGCAAGTCGTAGGGTGGTGGAACTTGGAGCAGCTTTCATGATTCTCTTCTCCTTTATGGGAAAAGTGGGTGCTCTTATTGCTTCCATTCCTCAGGCCTTGGCTGCTTCGGTACTGTGTTTCATTTGGGCTCTTATAGCAGCTTTAGGCCTTTCAAACTTACAGTATGGTAAATGTGCCAGCTTCAGGAACATGAAAATAGTTGGTCCTCAAACCAGTCTGATACTACCTGCTTACCTGTTACCTTATGGGGCTGCATCTAGTGGACCATTCCATTTTGGCAATAAACAACTTCATTTTGCCATCAATGCTCTTATGTCCTTAAACATGGTGGTAACACTGTTGGTGGCATTCATACTAGACAACACTATCCCAGGAACAAAAGATATTGCAACTGATCCTTCTCTGCAATCTGCATATTCTTTGCCAAGGAAAATTGCTAGGTGTTTCGGTTGGGCGAAATGTTTGGGAGTCTGA
Predicted protein sequences of Glyma08g38201
>Glyma08g38201.1   sequence type=predicted peptide   gene model=Glyma08g38201   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METGSSSEFLDKGKAMRGGTGKRHDVVSDTKVEPFVARSDHNPKELKSWAKRTGFVSNYSGEVGTSASENFDSVGKIGDEAALVLVGDGDKKIGLRVNGDAYGMTVSTNRNINSHGVSAVAPLPEQKKEKEGIVEDVKVNHFPEGEEPASRGWQGASGLKSIIVCSIISWRLILKFKSMHYEFYDGKTSYHNNKLNNRHYLSLIGSLVLIPLIMVLTMGGTDNDTANVISTMLFLSGVTTILHCYFGTQLSLVQGSSFVYLAPALVIINAEEFRNLTHHKCRHIMTELQGAIIVGSIFQCILGLSGLMFLLLRIINPIVVAPTVAAVGLAFFSYGFPQAGTCMKISIPQIALVLLFTLHLRGISIFGHHTFRICAVPLTVTLTWIYASFLTAGGGYNYKGCNPNIPSSNILIGACRKHAYTMKHCRTDISNALLTSAWLRILYPLQWGFPIFHFRTCIMMAIVSLAASVDSVGTYYSASLRVNLRPLSPGVVSRGIALEGLYSILAGLWGSGTGSTTLTENVQTIDTTKVASRRVVELGAAFMILFSFMGKVGALIASIPQALAASVLCFIWALIAALGLSNLQYGKCASFRNMKIVGPQTSLILPAYLLPYGAASSGPFHFGNKQLHFAINALMSLNMVVTLLVAFILDNTIPGTKDIATDPSLQSAYSLPRKIARCFGWAKCLGV*






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