Glyma08g38190 - SoyBase

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Report for Sequence Feature Glyma08g38190

Feature Type:	gene_model
Chromosome:	Gm08
Start:	37078963
stop:	37085281
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g38190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65510	AT	Annotation by Michelle Graham. TAIR10: AINTEGUMENTA-like 7 \| chr5:26185829-26189413 FORWARD LENGTH=498	SoyBase	E_val: 1.00E-126	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009887	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ morphogenesis	SoyBase	N/A	ISS
GO:0010492	GO-bp	Annotation by Michelle Graham. GO Biological Process: maintenance of shoot apical meristem identity	SoyBase	N/A	ISS
GO:0060771	GO-bp	Annotation by Michelle Graham. GO Biological Process: phyllotactic patterning	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR11795	Panther	PROTEIN KINASE	JGI		ISS
PTHR11795:SF332	Panther		JGI		ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_B9HFM2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AP2 domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9HFM2_POPTR	SoyBase	E_val: 2.00E-142	ISS
UniRef100_UPI0002338255	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338255 related cluster n=1 Tax=unknown RepID=UPI0002338255	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g38190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g38190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g279000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g38190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g38190

Limit To All Plant Sequences

>Glyma08g38190.2   sequence type=CDS   gene model=Glyma08g38190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGTGCCACGAATTGGCTTACGTTTTCGTTGACTCACATGGAAATGCAGCAGTTCGGTCCATACGACACCACCACTCACTCTCACTGCTTCAACGACAGCAATTTTTATGGGTGGACGAATTCTAAGAGCGTCATGGATTCACAGAGTGAGACCCAACAACTTGCGGTGCCAAAAATGGAAGATTTTTACTTCGGTGATCACCAGCAAGATCTGAAGGCGATGATTGTTCCTGGGTTCAAAGCGTTGTCTGGGACCAACTCGGGGTCCGAGGTGGATGACTCGACCTCCAACAAGACGGTGACTCGGGTTGCACCCGCTGCGTTGGGCGGTGCTCACTCTGGCGAATCTAATTGTAAAGGATCAGCTTTGACTTTATGCGATGTTGCTGCGAATGGTTCTGATGATAGTAATAATAAGGCCGTTGTTGCCGTGGGGTTTGATACTCGGAAGAAGGTTGCTCATACGTTTGGCCAGCGAACTTCAATTTACAGAGGGGTCACAAGGCACCGATGGACGGGAAGATATGAAGCGCATCTATGGGATAACAGCTGTAGGCGAGAGGGTCAGGCCAGGAAAGGGCGTCAAGTGTACTTGGGTGGATATGACAAGGAAGATAAGGCTGCGAGGGCTTATGATTTAGCAGCTCTAAAGTACTGGGGACCAACAGCCACGACTAACTTTCCTATTTCCAATTATACAAAGGAATTGGAGGAGATGGAACATGCAGGAAGGCAAGAATTTATTGCATCACTGCGAAGGAAAAGTAGTGGTTTTTCAAGGGGAGCTTCTGCTTACAGAGGTGTTACAAGGCATCACCAACAGGGTAGATGGCAAGCAAGAATTGGCCGAGTTGCGGGAAACAAGGATCTATACTTGGGAACATTTTCAACTGAAGAGGAGGCAGCAGAGGCTTATGACATTGCAGCCATAAAGTTCAGAGGTTCGAGCGCCGTAACCAATTTCGAGATGAGTCGATATGACGTCGACACTATATTGAACAACTCGCTTCCAGTTGGTGGCGTAGCAAAGCGCTTGAAAGTTTCCCCAGCAACGGAGAACAAAGCTCTTATCAGCACCATTATTCAACCACCTCAGAACACAAACGCAAGTAGCAGCATCAATTTCTCAGCCATTCAGCCAGTTTCTTCTATACCCTATGATTCTGCAATCACATGTTACCCCCACAACTTCTTCCACCACCATTTCAATCCTACCAACGGTGGAACTAGCTCATCAGATTCTGCTGCTGCTGCAGCAGTGACCGATGCGATTGCACTCAATACCCTTCCACCACCAGCAGTTCCTGGGTTCTTCATATGGCCTCACCAGTCCTACTGA

Predicted protein sequences of Glyma08g38190

Limit To All Plant Sequences

>Glyma08g38190.2   sequence type=predicted peptide   gene model=Glyma08g38190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGATNWLTFSLTHMEMQQFGPYDTTTHSHCFNDSNFYGWTNSKSVMDSQSETQQLAVPKMEDFYFGDHQQDLKAMIVPGFKALSGTNSGSEVDDSTSNKTVTRVAPAALGGAHSGESNCKGSALTLCDVAANGSDDSNNKAVVAVGFDTRKKVAHTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDKAARAYDLAALKYWGPTATTNFPISNYTKELEEMEHAGRQEFIASLRRKSSGFSRGASAYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGSSAVTNFEMSRYDVDTILNNSLPVGGVAKRLKVSPATENKALISTIIQPPQNTNASSSINFSAIQPVSSIPYDSAITCYPHNFFHHHFNPTNGGTSSSDSAAAAAVTDAIALNTLPPPAVPGFFIWPHQSY*

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