SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G05520 | AT | Annotation by Michelle Graham. TAIR10: EPS15 homology domain 2 | chr4:2804522-2807833 FORWARD LENGTH=545 | SoyBase | E_val: 2.00E-66 | ISS |
| GO:0006897 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endocytosis | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0043231 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| PTHR11216 | Panther | EH DOMAIN | JGI | ISS | |
| UniRef100_G7ILR3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: EH-domain-containing protein n=1 Tax=Medicago truncatula RepID=G7ILR3_MEDTR | SoyBase | E_val: 5.00E-77 | ISS |
| UniRef100_I1KX74 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KX74_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g38150 not represented in the dataset |
Glyma08g38150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
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| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g38150.1 sequence type=CDS gene model=Glyma08g38150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGATCGAATCGCGTTCGAAAGAGGAAACAAAGACGTATCAGGAATGGTTTAATTTGGTAGATTCAGATGGAGATGGTCGAATCTCTGGGAATGACACCACAAAGTTCTTCGCTCTCTCCAACTTGTCGCGCTCTCAACTGAAGCGACTCTGGGCTCTCGCCGATGTCAAAAGACAAGGGTTTTTGGGCTTCACGGAGTTTGTTACTGCAATGCAGTTGGTTTCACTAGCACAAGTAGGGCAAGAACTTAACTCAGATATCCTCAAAACGCAAAGCAAGTGTACTTTCATAATTTTCCCCTCTTCATTAGAAATTGCTAAAATGACTCTATTTCCCTTTATTACAGTTGACAAGGAAAATATTAAACCTCCCGTATTGGAAGGACTCGATGCTTTAGTAGCAATTGTGTTAATTAATTCTATTGATTCCTTTCCTTATTGTTCTTTTTCCCAGCAAATGAGTTTAACAATTAATGCCCCGCCGGAGGTAAATGTACTAAATTTTGTTAACTGTGTTTCTGAGAGCATGGTACTAGTTCTCATTAACATTGTATCTGGACCTGATCAAAGAAGCATTCCTGGAAATACTATTGTTGTTGATGCTCACATGCCTTTTGGTGGCCTGGCAACATTTGGAGGTTCATTTTTATCTAAGTTCCAATGCTCTCAAATGCCACACCCTGTGACAATTATTTTCTTTCAGTCGTTAGATGAAGTAACATTTGTGGACACTCCTGGTGATTTCATTGGTGTTGTATCTTGGTTTGCTGCAAAATGTGATATCATTCTTCTCTTTCCATTTAGACTGTACCCTCCTTTCCTTTTATATCATCTTATGGAACTGAAAGCTCTCAAGCCTCTCCTATCCATACACCATATAGTGAATGAGATTAGTCCTCTGAATTTCTTCAAAGATAATAGACATGCCAGAAGACTCTTCTTTCTTCACTTATGTTATGTATTAGTTGCAGTCATTGAAACTCTACAAGGATACGTTAACGTCTATGAAGGCTTAAATAAAATTAAAGATGTGGCTGAGCTCATTAAGTTGAAAGTGGACAAGCATCACACTTTAAGGCGACCACTTCAAATGCGGAAACAAAAGCCAGTACCAATCAAATTACTGAATCCCAAGTTTGAGAATGCCATCATATTTTATACTATATTGGACAAAATCCCCAATTTTGAAACAGAGTTAATCGGATTTGGAGGGTTTAAAGAGCAAGGATTGAGGCTAGAACCAGAAACTCTACAGCCCTTTTCAAGATTGTATTATGTGGGGATCGATTCCAGATCTTCTCCCACAAACTCAGCTTGTGTTAGAAACTTAACTATAGGGATTGGGTACTTTGCAAAGTTAATAATGTTAAGAATAACTAGCATGTATAATAAGGAAAATGCATCAACCAATTTGTTTGCAATGGCAGTTGGGATAAAGCAAAAGGATCTTGTGAACAAAATG
>Glyma08g38150.1 sequence type=predicted peptide gene model=Glyma08g38150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKIESRSKEETKTYQEWFNLVDSDGDGRISGNDTTKFFALSNLSRSQLKRLWALADVKRQGFLGFTEFVTAMQLVSLAQVGQELNSDILKTQSKCTFIIFPSSLEIAKMTLFPFITVDKENIKPPVLEGLDALVAIVLINSIDSFPYCSFSQQMSLTINAPPEVNVLNFVNCVSESMVLVLINIVSGPDQRSIPGNTIVVDAHMPFGGLATFGGSFLSKFQCSQMPHPVTIIFFQSLDEVTFVDTPGDFIGVVSWFAAKCDIILLFPFRLYPPFLLYHLMELKALKPLLSIHHIVNEISPLNFFKDNRHARRLFFLHLCYVLVAVIETLQGYVNVYEGLNKIKDVAELIKLKVDKHHTLRRPLQMRKQKPVPIKLLNPKFENAIIFYTILDKIPNFETELIGFGGFKEQGLRLEPETLQPFSRLYYVGIDSRSSPTNSACVRNLTIGIGYFAKLIMLRITSMYNKENASTNLFAMAVGIKQKDLVNKM
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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