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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma08g37950

Feature Type:gene_model
Chromosome:Gm08
Start:36773890
stop:36775475
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G13420AT Annotation by Michelle Graham. TAIR10: Aldolase-type TIM barrel family protein | chr5:4302080-4304212 REVERSE LENGTH=438 SoyBaseE_val: 2.00E-101ISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0009060GO-bp Annotation by Michelle Graham. GO Biological Process: aerobic respiration SoyBaseN/AISS
GO:0009809GO-bp Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process SoyBaseN/AISS
GO:0033587GO-bp Annotation by Michelle Graham. GO Biological Process: shikimate biosynthetic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004801GO-mf Annotation by Michelle Graham. GO Molecular Function: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity SoyBaseN/AISS
PTHR10683Panther TRANSALDOLASE JGI ISS
PF00923PFAM Transaldolase JGI ISS
UniRef100_I1KX66UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KX66_SOYBN SoyBaseE_val: 5.00E-177ISS
UniRef100_Q38HS6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transaldolase-like protein n=1 Tax=Solanum tuberosum RepID=Q38HS6_SOLTU SoyBaseE_val: 2.00E-107ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g37950 not represented in the dataset

Glyma08g37950 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g37950.2   sequence type=CDS   gene model=Glyma08g37950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGAAGTCCGTGTGTTTACATGAAAATTCCTGCCACTGATGAATCCATCTCTTCCATGAAGGAGGTCATTTCTCTGGGGATAAGTGTAAATGCCACTCTCATATTCTGCCTCCCTAAATATGAAGCAGTGATTGATGCTTACTTGGATGGCCTTGAGTCTTGTGGCATGACTGATCTCTCTAAGGTTTCAAGTGCAGCAGCATTCTACATCAGTAGAGTGGATGTTACACTTGACAAGAAACTTGAGCAAATTGGTACTACTGAGGCTCTTGATCTCAAAGGAAAGGGTGCGGTTGCTCAAGCAGTCTTAGCATACCAACTTTACCAGAAAAAATTTTCTGGTCCAAGATGGGAACGCTTGGAGAATAGAGGTGCCAAGAAGCAGAGGTTGATGTGGGCTTCAACAAATGTGAAAAATCCATCTTACCCTGACACATTTTATGTTAATTCTCTTATTGGACCAGATACAATTTCAACCTTACCAGTACAAGTTCTTCAAGCATTCATGGACCATGGTATTCTTTCAAGAACGCTTGATGCAAAAGTATCAGAGGCTCAAGACATTTACAATGCAATTGAGAAGTTGGGGATTGATTGGAGTTCTGTTGGATCAGAACTGGAACATGAGGTGCTGGATTCTTTCACAAAAAGCTTTGACAATGTGCTTGAATGCATGCAAAAGAAGGCTATGAACATATATTCATTTCAAAAGCACGTTTAA

>Glyma08g37950.2   sequence type=predicted peptide   gene model=Glyma08g37950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGSPCVYMKIPATDESISSMKEVISLGISVNATLIFCLPKYEAVIDAYLDGLESCGMTDLSKVSSAAAFYISRVDVTLDKKLEQIGTTEALDLKGKGAVAQAVLAYQLYQKKFSGPRWERLENRGAKKQRLMWASTNVKNPSYPDTFYVNSLIGPDTISTLPVQVLQAFMDHGILSRTLDAKVSEAQDIYNAIEKLGIDWSSVGSELEHEVLDSFTKSFDNVLECMQKKAMNIYSFQKHV*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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