SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G38020 | AT | Annotation by Michelle Graham. TAIR10: tRNA/rRNA methyltransferase (SpoU) family protein | chr4:17861568-17863010 FORWARD LENGTH=352 | SoyBase | E_val: 2.00E-131 | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0008173 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA methyltransferase activity | SoyBase | N/A | ISS |
| KOG2506 | KOG | SpoU rRNA Methylase family protein | JGI | ISS | |
| PTHR12029 | Panther | RNA METHYLASE | JGI | ISS | |
| PTHR12029:SF8 | Panther | RNA-METHYLASE-RELATED | JGI | ISS | |
| PF00588 | PFAM | SpoU rRNA Methylase family | JGI | ISS | |
| UniRef100_C6T8X9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T8X9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7LIJ4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RNA methyltransferase-like protein n=1 Tax=Medicago truncatula RepID=G7LIJ4_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma08g37630 not represented in the dataset |
Glyma08g37630 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g276900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g37630.1 sequence type=CDS gene model=Glyma08g37630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAATGTTCTTCCATCTTTTATCCTCAGACACATAAAATATGGTGCTTTAAGCCAAGTCTTTCAGTAACGCCACCGCCACAACAACAACAACAACAACGAACCTCTCACGAAGAAAAACCGAAGCCGATAACCAGTGTTTCGAACCCATTTGTGAAGCACTGCCTCAAACTTCGCAATTCCTCTTCTTATCGTCGCTCTCATGCTTCTGCTATTGTTGTGGGTGCTACCCCTATAAGAGAAATCTGCAGGTTTCGAGAGTCAATACAAGATGGAAGTGTTTTAATGGATTGTTTAATTCTTCCTGATAAAGCTGATATTCCTGATGGGTTGGATAAATCCACTGCTTCTGTTGTGCGCGTGAGCTCCGTAGTGATGAGAAAGCTTTCAGGGCTGCAAACAACTGAATCTCTTGATGCCATTGCCCTTATGAAAATTCCTGCCAGTTTTTTCAGTGTTGATGATCATCAGAAGAACTGCCTAAAGTGGTTTCCATCTGTTCATCGAATTTTAGTCCTTGATGGGATTCAGGATCCTGGTAATCTTGGTACATTGCTCAGATCAGCCGTGGCCTTCAGATGGGATGGAGTTTTCCTTCTCCCCGGCTGCTGTGATCCATTCAATGAGAAAGCTCTTCGGGCTAGCCGGGGTGCCTCGTTTCAGCTCCCTGTTGTTTCTGGCAGTTGGAATCACCTGGAGTCGCTCAAAAAAGAATTCCAAATGAGGTTTCTGGCTGGTCATCCAGAGCATGAAGGGTTGGTCAAGCCAGTGAGTTCACTCTCTCCAAGCTTCTGTGATTCCTTATCAGATACACCATTGTGCTTGGTTTTAGGCAGTGAAGGAAGTGGCCTTTCAGAAAAATCCCTGCAGACATGTGAGCTTGTGAGCATTGCAATGACTGGAGAATATGAGTCACTCAATGTTTCAGTTGCTGGTGGAATTTTCTTGTACATGCTCCAACCAAAGAATACATGA
>Glyma08g37630.1 sequence type=predicted peptide gene model=Glyma08g37630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQCSSIFYPQTHKIWCFKPSLSVTPPPQQQQQQRTSHEEKPKPITSVSNPFVKHCLKLRNSSSYRRSHASAIVVGATPIREICRFRESIQDGSVLMDCLILPDKADIPDGLDKSTASVVRVSSVVMRKLSGLQTTESLDAIALMKIPASFFSVDDHQKNCLKWFPSVHRILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPGCCDPFNEKALRASRGASFQLPVVSGSWNHLESLKKEFQMRFLAGHPEHEGLVKPVSSLSPSFCDSLSDTPLCLVLGSEGSGLSEKSLQTCELVSIAMTGEYESLNVSVAGGIFLYMLQPKNT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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