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Report for Sequence Feature Glyma08g37602

Feature Type:gene_model
Chromosome:Gm08
Start:36392725
stop:36400935
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g37602
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G00026AT Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:11634-13285 REVERSE LENGTH=269 SoyBaseE_val: 4.00E-15ISS
GO:0090351GO-bp Annotation by Michelle Graham. GO Biological Process: seedling development SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF12327PFAM FtsZ family, C-terminal domain JGI ISS
UniRef100_C6TAF0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TAF0_SOYBN SoyBaseE_val: 6.00E-17ISS
UniRef100_Q10NZ2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa Japonica Group RepID=Q10NZ2_ORYSJ SoyBaseE_val: 1.00E-13ISS

Expression Patterns of Glyma08g37602
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g37602 not represented in the dataset
Glyma08g37602 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g37602 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma08g37602
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g37602
>Glyma08g37602.1   sequence type=CDS   gene model=Glyma08g37602   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGATTGGATTTCCAATTACTTGTCATGGTCAGGAGAGTAGAAATCGAGCTGCTTGCCAAAGAATTCCTCACAGGGTATGGACTGATGAGGAAGGTGTTGAGCATGTGGAGGTAAACACGGCAGCAGAGGTCATATATGACCTCGTGGACCCTACTGCTAATTTAATATTTGGTGCAGTAATAGATCCATCACTCAGTGGTCAAGATATTGATGTTTTGAATGGGGATAACATGGGATGA
Predicted protein sequences of Glyma08g37602
>Glyma08g37602.1   sequence type=predicted peptide   gene model=Glyma08g37602   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRIGFPITCHGQESRNRAACQRIPHRVWTDEEGVEHVEVNTAAEVIYDLVDPTANLIFGAVIDPSLSGQDIDVLNGDNMG*






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