SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g37548

Feature Type:gene_model
Chromosome:Gm08
Start:36320898
stop:36347905
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g37548
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G14170AT Annotation by Michelle Graham. TAIR10: aldehyde dehydrogenase 6B2 | chr2:5977727-5981489 REVERSE LENGTH=498 SoyBaseE_val: 0ISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0015996GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0004028GO-mf Annotation by Michelle Graham. GO Molecular Function: 3-chloroallyl aldehyde dehydrogenase activity SoyBaseN/AISS
GO:0004491GO-mf Annotation by Michelle Graham. GO Molecular Function: methylmalonate-semialdehyde dehydrogenase (acylating) activity SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
KOG2450 KOG Aldehyde dehydrogenase JGI ISS
PTHR11699Panther ALDEHYDE DEHYDROGENASE-RELATED JGI ISS
PTHR11699:SF27Panther gb def: aldehyde dehydrogenase [nostoc sp. pcc 7120] JGI ISS
PF00171PFAM Aldehyde dehydrogenase family JGI ISS
UniRef100_B9T2B3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Methylmalonate-semialdehyde dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9T2B3_RICCO SoyBaseE_val: 0ISS
UniRef100_F6I723UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=F6I723_VITVI SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g37548
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g37548 not represented in the dataset
Glyma08g37548 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g37548 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g276400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g37548
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g37548
>Glyma08g37548.1   sequence type=CDS   gene model=Glyma08g37548   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCCTCCACCGCCTGGAAGTTTCCAAGACCGTGAAGACCTTATTAAACATGTTCGTGATTTCGGAGCTAATCAAGGATATGTTGTCACCATCAAGAAGTCCAGAAAGGATAGAAGAGTCATCCTTGGCTGTGACAGAGGAGGTGTCTATCGTAATAGACGAAAAATTGATGAAAGTAAGCGCAAAAGGAAAGCAACTTCACGCCTTATAAACTGTCCTTTTGAAGCCATAGGTAAAAAGGAAGATGATGCATGGGTACTTACTGTAAAAAATGGAGATCACAATCATGAACCGTTGAAAGACATGTCAGAACATCCTTATAGTCGACGTTTCACTGAGGAAGAAGTTAGACAAATCAAACAAATGACTGAAGCTGGTATAAAACCTCGTCAAGTGCTTAAAGCTCTCAAGCATAGTAATCCTGAATTGCAGTCAACACCAAGGCATTTGTACAACCTCAAAGCAAAGATTCGTCAGGGAAATCTATCAGAGAAAACATTTAAGTCATGGAGACCAAATAGATCTATCCATGTTGAGATAAACAGTAATTCATCTGATGGTTCATTAAACCGAAACTATCAGCTGCTGAAGGTCTCAAATTTTATTGGGGGGAAATTTGTAGATTCTCAGGGTTCTGTAATCATTGATGTTATAAATCCCGCAACGCAAGAAGTTGTATCTCAAGTTCATTTAACTATATATGAAGAGTTTAAAGCTGCAGTTAGTGCAGCCAAGCAAGCTTTTCCTTCATGGAAAAATACTCCTATCACCACTCGTCAACGCATTATGTTTAAACTTCAGGAGCTTATCCGCAGAGATATTGATAAGCTTGCCATGAACATCACCATAGAACAGGGCAAGACATTAAAAGGTGCAAAAAGAGATGTGCTTTATGGTTTAGAAGTGGTGGAGCATGTTTGTGGGATGGCAAACCTGCAAATGGGGGAATTTGTCCCCAATGCCTACAATGGGATTGATACGTACTGCATTAGAGAGCCCCTTGGAGTTTGTGCTGGAATATGTGCCTTTAACTTTCCAGCAACGATACCATTGTGGATGTTCCCTATTGCAATTACATGTGGCAACACTTATATTCTTAAGCCATGTGAGAAAAATCCAGGGGTTTCAACGATACTTGCAGCACTAGCAAAAGAAGCTGGTTTGCCAGATGGTGTATTAAATATTGTTCATGGTACCCATGATATTGTTAATTACATATGCAATGATGAAGATATAAAAGCTGTATCGTTTGTTGGTCCAATTACAGCTGGAATATATGCCACAGCTTCTGCTAGAGGGAAACGAGTTCAGTCAAATGCAGGTGGCACAAATCATGTACTTGTAATGCCCGATGCTGGCTTGGATGCGACTTTAGATGCCCTTGTTCCTGCTGGCTTTGGTGCTGCAGGAGAGAGGTGCATGACTTCAAGCATAGCTATTTTTGTTGGAGGTTCAATGCAATGGGAGGAAAAACTAGTGCAGCGTGCCAAACTACTTAGAGTAAATGCAGGAACAAATCCTAGTGCAGACATTGGTCCAGTTATTAGCAAAGAGGCAAAGGAGAGGATATGTAGACTAGTTCAGAGCAGTGTTGAAAATGGGGCTAGACTTCTACTTGATGGAAGAGATATTGTGGTACCGGGATATGAAAATGGGAACTTTGTTGGTCCTACTATCTTATGTGATGTTACAACCTGCATGGAATGTTACAAGGAAGAAAGTTTTGGACCAGTTCTGCTTTGCATGCAGGCCGACAACATAGATGGGGCTATGTCAATAATAAATAAAAACAGATATAGAAATGGAGCTTCTATATTCACCACATCTGGTATAGCTGCTAGGAGGTTCCAGAATGAAGTTGAGGCAGGACTGGTTGGGATCAATGTGCCAGTACCTGTTCCATTACCGTTTTCCTCCAATGGGTCAAAATCATCATTTGCTGGTGATAGTTTTTCTGGAAAAGCTGGAGTACAGTTTTATACCCAAATCAAAACAGTGGTTCACCAATGGAAGGATTTCCCTAGACAAGCACTATTCCCTGCTACATGTCCATCTGAGAGAGATTCACCTAGGCAATTGTCACAAGCCATGCCTGTAGAATCTGAAAGTGATTCACCAACCTATGAAGTACAAGTGGCCATCACTGATGTGGATATACCGAACACAACCATGTCATCTGCATCTACATCAACTGATAAGGATCACAGAAGCCAGGATGTTTCCCTATTGCTGCCTTCAGCATCTGAGAGGGATATGTCAGATCGGGATATTTCACTG
Predicted protein sequences of Glyma08g37548
>Glyma08g37548.1   sequence type=predicted peptide   gene model=Glyma08g37548   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPPPPGSFQDREDLIKHVRDFGANQGYVVTIKKSRKDRRVILGCDRGGVYRNRRKIDESKRKRKATSRLINCPFEAIGKKEDDAWVLTVKNGDHNHEPLKDMSEHPYSRRFTEEEVRQIKQMTEAGIKPRQVLKALKHSNPELQSTPRHLYNLKAKIRQGNLSEKTFKSWRPNRSIHVEINSNSSDGSLNRNYQLLKVSNFIGGKFVDSQGSVIIDVINPATQEVVSQVHLTIYEEFKAAVSAAKQAFPSWKNTPITTRQRIMFKLQELIRRDIDKLAMNITIEQGKTLKGAKRDVLYGLEVVEHVCGMANLQMGEFVPNAYNGIDTYCIREPLGVCAGICAFNFPATIPLWMFPIAITCGNTYILKPCEKNPGVSTILAALAKEAGLPDGVLNIVHGTHDIVNYICNDEDIKAVSFVGPITAGIYATASARGKRVQSNAGGTNHVLVMPDAGLDATLDALVPAGFGAAGERCMTSSIAIFVGGSMQWEEKLVQRAKLLRVNAGTNPSADIGPVISKEAKERICRLVQSSVENGARLLLDGRDIVVPGYENGNFVGPTILCDVTTCMECYKEESFGPVLLCMQADNIDGAMSIINKNRYRNGASIFTTSGIAARRFQNEVEAGLVGINVPVPVPLPFSSNGSKSSFAGDSFSGKAGVQFYTQIKTVVHQWKDFPRQALFPATCPSERDSPRQLSQAMPVESESDSPTYEVQVAITDVDIPNTTMSSASTSTDKDHRSQDVSLLLPSASERDMSDRDISL






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo