Glyma08g37420 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g37420

Feature Type:	gene_model
Chromosome:	Gm08
Start:	36043876
stop:	36047672
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g37420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22620	AT	Annotation by Michelle Graham. TAIR10: Rhamnogalacturonate lyase family protein \| chr2:9604902-9610156 REVERSE LENGTH=597	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016829	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lyase activity	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
PF06045	PFAM	Rhamnogalacturonate lyase family	JGI		ISS
UniRef100_G7LIJ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rhamnogalacturonate lyase n=1 Tax=Medicago truncatula RepID=G7LIJ0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KX52	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KX52_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g37420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g37420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g275600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g37420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g37420

Limit To All Plant Sequences

>Glyma08g37420.2   sequence type=CDS   gene model=Glyma08g37420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATAGCAGATGATAGGCAACGAGTCATGCCAACGGCAGAAGATAGATCTAAAGGGAGACGCCTTGATTTTGATGAAGCAGTTCTAATAACCAACCCTAGTAATCCAGAACTTCAAGGAGAGGTTGATGACAAATACCAATATTCTTGTGAGAACAAAGACAATAAAGTTCATGGGTGGATTAACTTGGACTCCAATTCCAATGAATCTGTGGGCTTCTGGATGATAACACCAAGTAATGAGTTTCGTAGTGGTGGCCCAATTAAGCAAGGCCTCACTTCTCATGTCGGGCCAACCACACTCAATATACTTCATACCACTCATTACTCGGGGAAGGAGGTAACCATGGCATTAAAAGAAGGGGAACCCTTCAAGAAAGTTTATGGCCCTGTTTTTGCTTATCTGAACTCAGTTTCTAGTGGCCATGATTCACAAGCCCTATGGAGTGATGCTGTACAACAGCTGTCTGAGGAAATCAAAAGTTGGCCTTATGATTTCCCTAATTCAGAAGAATTTTTCCCAGCCAATAAACGAGGAAGGGTGGAAGGAAGATTACTAGTCCAAGACCGGCACATTCAGGGAGGGAATTTTGTATATGGCGACAATGCTTATGTTGGTTTGGCTCTTCCGGGAGATGTGGGATCATGGCAAAGACAAAGCAAGGGTTACCAATTTTGGACTGAAGCTGACAAAGTAGGTCAATTCACAATTGAAAATATTCTACCGGGGGACTATGATTTATATGCATGGGTTCCTGGCATTTTTGGGGACTATAAACATAACACTACTATAACCATCACACCAGGTTGTGTTATCCAATTGGGTTCACTAATATACCATCCACCAAGAAATGGACCTACCATATGGGAAATTGGCATTCCAGATCGCTCTGCTGCGGAGTTCTATGTTCCAGATCCTTATCCTAACCTCATCAACCGATTATACATTGGGAAACCAGCACACAAGTTTAGACAATACGGATTATGGCAGCGTTATACCGAGTTATACCCAAGTCAGGACCTCGTTTATAATGTTGATGTCAGTAATTATAGTAAAGATTGGTTTTATGCTCAGATTCCCAGGAACATAGGAAACAACACATTTAGCCCAACAACATGGGAGATTAAATTCCATCTCCCATTTGTTATAAGAGGCACCTACACACTGCAACTTGCCTTGGCCTCAGCTACTCGTTCTAACTTGGTGGTTCGGCTCAATAACCCTGTGGCTCGTCCTCCACACTTCTCAACGGGATTAATAGGCCGAGACAATTCCGTAGCAAGACATGGCATCCATGGATTGCACAGGCCTTACAGCATTGAAGTACCAAGCTATCTATTGGTGGAAGGAACCAACACCATCTATTTGAGGCAATCAAAAGGTCTAAGTCCTTTCCTAGGAGTTATGTATGACTACATCCGTTTGGAAAGACCTGAAACTTAG

Predicted protein sequences of Glyma08g37420

Limit To All Plant Sequences

>Glyma08g37420.2   sequence type=predicted peptide   gene model=Glyma08g37420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIADDRQRVMPTAEDRSKGRRLDFDEAVLITNPSNPELQGEVDDKYQYSCENKDNKVHGWINLDSNSNESVGFWMITPSNEFRSGGPIKQGLTSHVGPTTLNILHTTHYSGKEVTMALKEGEPFKKVYGPVFAYLNSVSSGHDSQALWSDAVQQLSEEIKSWPYDFPNSEEFFPANKRGRVEGRLLVQDRHIQGGNFVYGDNAYVGLALPGDVGSWQRQSKGYQFWTEADKVGQFTIENILPGDYDLYAWVPGIFGDYKHNTTITITPGCVIQLGSLIYHPPRNGPTIWEIGIPDRSAAEFYVPDPYPNLINRLYIGKPAHKFRQYGLWQRYTELYPSQDLVYNVDVSNYSKDWFYAQIPRNIGNNTFSPTTWEIKFHLPFVIRGTYTLQLALASATRSNLVVRLNNPVARPPHFSTGLIGRDNSVARHGIHGLHRPYSIEVPSYLLVEGTNTIYLRQSKGLSPFLGVMYDYIRLERPET*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain