Glyma08g37250 - SoyBase

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Report for Sequence Feature Glyma08g37250

Feature Type:	gene_model
Chromosome:	Gm08
Start:	35615942
stop:	35623940
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g37250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25570	AT	Annotation by Michelle Graham. TAIR10: binding \| chr2:10885881-10887842 REVERSE LENGTH=288	SoyBase	E_val: 6.00E-128	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
PTHR11102	Panther	SEL-1-LIKE PROTEINS	JGI		ISS
PF08238	PFAM	Sel1 repeat	JGI		ISS
UniRef100_D7LL59	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LL59_ARALL	SoyBase	E_val: 3.00E-125	ISS
UniRef100_I1KX44	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KX44_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g37250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g37250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g274300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g37250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g37250

Limit To All Plant Sequences

>Glyma08g37250.4   sequence type=transcript   gene model=Glyma08g37250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAAATATATAGGTATTCAATGGGTAGAGGAATGGAAATTAAAATTCTTATCCGATATGAGATTGAATATGAGTGTTTTTTAGATGTGTCTATGAGAACCATACCATAAGACTCTCTTTAAGACTCTTCTGAGATCCTAGCCATTCGCATGCCTAACTGCACTAAACCGCCTTATCTGTCTGATTAACCCGTCAACCCCGTTCGAACCCACCCGTTTTGGACATCTTCTTTACCGGTTATGGGCCGGGTTGGAAAAAAATGCACACCTCTACTATCGCGCATCCCTTTCTTCACTTCTTCATGCTTCGACTCTTCTGCGCCTGACCTCCACCGTCGTCTGAGTCGCGCCGCCGTTTGGCTTCGCCGGATTTCTCCTATGTTCGCCTAACGAGACAGAGTGAATCCTGAATCGCACTTCGAACGTGTTCTCTTCGACATCTTCACTTAAGCCTTCGATTTGTATAAGATGCTTCCGAGGGCTTTATTGGCCAAATTCATTCTCAAACCCTCCACTGTTTCTCCATTCCAGTTCAATCAGCAGAGAGCATTGCATAGTAGGAACAAGAAAGCCTTGGAGTTCATTGCAAAAGGCTGGAATGCTTTGAAGGAGGTTGATAGAGTCATCGATTATTCCGATCCCAAGCATTCGGGCATTGTTTCTCTTCTCAGGACAGCTAAGGAGAATTTCGAGCTTGCTTTGGAAGCTGATAATACCAATACCCATGCTAGGTATTGGTTGTCCAGATTGCATATGAAATACCCTGTTCCAGGAGCTAATAAAGCTGTAGGGGCAGCATTATTGGTAGAAGCAGCAGAAATGGGTGATCCTGAGGCACAGTATGCATTGGGTTGTCATCTAAGAGTTGAGAATGACTATGTCCAGTCTGATCAACAAGCTTTTTATTATTTGGAGAAAGCTGTGGACCAGTTGCATCCAGGTGCTCTTTACCTTTTGGGTGCTGTATATTTGACAGGCGACTGTGTCAGGAAAGATATTGCTTCTGCATTGTGGTGTTTCCACAGAGCATCAGAAAAGGGCCATGCTGGGGCTGCTATAGCATATGGATCTCTTCTTCTTAAAGGTGTTGAGGTTCCAGAATCGGTAATAAAGTTCAGTTTGACGAGAGGTGCTGCAGCTCATAGACGGGGGAGGAATAAGGGAGCTCTTGCAATTGATCCAGTAGAGATGGCAAGAGAAAAGTTTCAGATAGCGGCAAAAGCAGGGTGTGAGCTTGGATTCAAATGGCTTGCAAGGTTAGAGGAGGAAGAGAAACGGGCACTCACGGGGGAACATTGAGATGAAATTGAGAAGTGTAGTGTGCTTTTTTTTCTTTCTTTTTTTTTTCGTAGCAGAATCCGATCTGAATCATATGATTTAGCTTGTCTGAATTGTGGATTTTAATCATCGGTGAAAAACAATAAATAAAGGTGAGGATTTTTGTCATTGTATAGTTTGTTGTGCATGTATATTACTATTCTTTTCATCAACAGTTCAAATTTCCCAATTTTCCTTTTAATGTTGAATTGTTGATAACCAAATCCTGATTT

Coding sequences of Glyma08g37250

Limit To All Plant Sequences

>Glyma08g37250.3   sequence type=CDS   gene model=Glyma08g37250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCCGAGGGCTTTATTGGCCAAATTCATTCTCAAACCCTCCACTGTTTCTCCATTCCAGTTCAATCAGCAGAGAGCATTGCATAGTAGGAACAAGAAAGCCTTGGAGTTCATTGCAAAAGGCTGGAATGCTTTGAAGGAGGTTGATAGAGTCATCGATTATTCCGATCCCAAGCATTCGGGCATTGTTTCTCTTCTCAGGACAGCTAAGGAGAATTTCGAGCTTGCTTTGGAAGCTGATAATACCAATACCCATGCTAGGTATTGGTTGTCCAGATTGCATATGAAATACCCTGTTCCAGGAGCTAATAAAGCTGTAGGGGCAGCATTATTGGTAGAAGCAGCAGAAATGGGTGATCCTGAGGCACAGTATGCATTGGGTTGTCATCTAAGAGTTGAGAATGACTATGTCCAGTCTGATCAACAAGCTTTTTATTATTTGGAGAAAGCTGTGGACCAGTTGCATCCAGGTGCTCTTTACCTTTTGGGTGCTGTATATTTGACAGGCGACTGTGTCAGGAAAGATATTGCTTCTGCATTGTGGTGTTTCCACAGAGCATCAGAAAAGGGCCATGCTGGGGCTGCTATAGCATATGGATCTCTTCTTCTTAAAGGTGTTGAGGTTCCAGAATCGGTAATAAAGTTCAGTTTGACGAGAGGTGCTGCAGCTCATAGACGGGGGAGGAATAAGGGAGCTCTTGCAATTGATCCAGTAGAGATGGCAAGAGAAAAGTTTCAGATAGCGGCAAAAGCAGGGTGTGAGCTTGGATTCAAATGGCTTGCAAGGTTAGAGGAGGAAGAGAAACGGGCACTCACGGGGGAACATTGA

>Glyma08g37250.4   sequence type=CDS   gene model=Glyma08g37250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCCGAGGGCTTTATTGGCCAAATTCATTCTCAAACCCTCCACTGTTTCTCCATTCCAGTTCAATCAGCAGAGAGCATTGCATAGTAGGAACAAGAAAGCCTTGGAGTTCATTGCAAAAGGCTGGAATGCTTTGAAGGAGGTTGATAGAGTCATCGATTATTCCGATCCCAAGCATTCGGGCATTGTTTCTCTTCTCAGGACAGCTAAGGAGAATTTCGAGCTTGCTTTGGAAGCTGATAATACCAATACCCATGCTAGGTATTGGTTGTCCAGATTGCATATGAAATACCCTGTTCCAGGAGCTAATAAAGCTGTAGGGGCAGCATTATTGGTAGAAGCAGCAGAAATGGGTGATCCTGAGGCACAGTATGCATTGGGTTGTCATCTAAGAGTTGAGAATGACTATGTCCAGTCTGATCAACAAGCTTTTTATTATTTGGAGAAAGCTGTGGACCAGTTGCATCCAGGTGCTCTTTACCTTTTGGGTGCTGTATATTTGACAGGCGACTGTGTCAGGAAAGATATTGCTTCTGCATTGTGGTGTTTCCACAGAGCATCAGAAAAGGGCCATGCTGGGGCTGCTATAGCATATGGATCTCTTCTTCTTAAAGGTGTTGAGGTTCCAGAATCGGTAATAAAGTTCAGTTTGACGAGAGGTGCTGCAGCTCATAGACGGGGGAGGAATAAGGGAGCTCTTGCAATTGATCCAGTAGAGATGGCAAGAGAAAAGTTTCAGATAGCGGCAAAAGCAGGGTGTGAGCTTGGATTCAAATGGCTTGCAAGGTTAGAGGAGGAAGAGAAACGGGCACTCACGGGGGAACATTGA

Predicted protein sequences of Glyma08g37250

Limit To All Plant Sequences

>Glyma08g37250.3   sequence type=predicted peptide   gene model=Glyma08g37250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPRALLAKFILKPSTVSPFQFNQQRALHSRNKKALEFIAKGWNALKEVDRVIDYSDPKHSGIVSLLRTAKENFELALEADNTNTHARYWLSRLHMKYPVPGANKAVGAALLVEAAEMGDPEAQYALGCHLRVENDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVRKDIASALWCFHRASEKGHAGAAIAYGSLLLKGVEVPESVIKFSLTRGAAAHRRGRNKGALAIDPVEMAREKFQIAAKAGCELGFKWLARLEEEEKRALTGEH*

>Glyma08g37250.4   sequence type=predicted peptide   gene model=Glyma08g37250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPRALLAKFILKPSTVSPFQFNQQRALHSRNKKALEFIAKGWNALKEVDRVIDYSDPKHSGIVSLLRTAKENFELALEADNTNTHARYWLSRLHMKYPVPGANKAVGAALLVEAAEMGDPEAQYALGCHLRVENDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVRKDIASALWCFHRASEKGHAGAAIAYGSLLLKGVEVPESVIKFSLTRGAAAHRRGRNKGALAIDPVEMAREKFQIAAKAGCELGFKWLARLEEEEKRALTGEH*

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