Glyma08g36840 - SoyBase

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Report for Sequence Feature Glyma08g36840

Feature Type:	gene_model
Chromosome:	Gm08
Start:	35183017
stop:	35194460
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g36840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49640	AT	Annotation by Michelle Graham. TAIR10: Aldolase-type TIM barrel family protein \| chr3:18400480-18402809 REVERSE LENGTH=329	SoyBase	E_val: 7.00E-178	ISS
GO:0006808	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of nitrogen utilization	SoyBase	N/A	ISS
GO:0008033	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA processing	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0017150	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tRNA dihydrouridine synthase activity	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
PTHR11082	Panther	TRNA-DIHYDROURIDINE SYNTHASE	JGI		ISS
PTHR11082:SF4	Panther	NITROGEN REGULATION PROTEIN NIFR3-RELATED	JGI		ISS
PF01207	PFAM	Dihydrouridine synthase (Dus)	JGI		ISS
UniRef100_I1KX37	UniRef	Annotation by Michelle Graham. Best UniRef hit: tRNA-dihydrouridine synthase n=2 Tax=Glycine max RepID=I1KX37_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KX37	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: tRNA-dihydrouridine synthase n=2 Tax=Glycine max RepID=I1KX37_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g36840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g36840

Paralog	Evidence	Comments
Glyma01g23820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g36840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g273200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g36840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g36840

Limit To All Plant Sequences

>Glyma08g36840.2   sequence type=CDS   gene model=Glyma08g36840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTACCGCAACAAACTTGTTCTCGCTCCTATGGTCCGCGTTGGCACTCTCCCATTTAGATTACTAGCTGCTCAATATGGTGCAGATATCACTTACTGCGAGGAAATCATTGACCACAAGATGCTAAAGTGCGAGCGCCGAATTAACGAACTCATTGGATCCACTGATTTTGTGGAGAAGGGGACAAACAATGTTGTGTTTAGAACCTGTGATGAAGAAAAAGATAGGGTTGTGTTTCAAATAGGAACATCAGATGCTGTGAGGGCCCTAACTACTGCTCAGTTAGTGTGTAATGATGTTGCTGCAGTAGATATTAACATGGGTTGCCCGAAGTCATTTTCTGTGAGTGGTGGAATGGGTGCTGCTCTGTTGTCCAAACCAGAGCTTATTCATGATATCTTAACAACATTAAAGAGGAATTTGAACACACCAGTAACATGTAAGATTCGACTTCTAAAATCACCACATGATACCGTGGAATTAGCCAGACGAATTGAGAAAACTGGTGTTTCTGCTCTTGCAGTCCATGGAAGAAAAGTCCCAGATAGGCCCAGAGATCCTGCTAAGTGGAATGAAATCGCTGATGTTGTGTCAGCATTATCTATTCCAGTTATAGAAAATGGTGATGTTTTTGAGAATGATGATGTTGAACGCATTAAATCTGCCACAGGTGCCTCGTCAGTGATGGTTGCCAGAGGGGCACTCTGGAATGCTTCAATGTTTTCGCCCGAGGGCAAAGTTTCTTATGAAGCTGTGAAAAGAGAATATATTAGGAAGTGCATCTTGTGGGATAATGATATAAAAAGCACCAAGCATACATTAAAGGAAATGATAATACATTATTCTTGTCTAGAACTGCCTGAAGGGAAGGCTGTGATCAAATCAGAGTCCATGGCTGATCTAGCGTTGGTCAAAGCAATCTCTATTCAACTCAACCTTATCTTTCCACCACCATCATCTCGTCTAAAGCCCAAATCACTCAACAGTCACAGTCATGTGGTGCATCAAACATTGAATAGTATAAAAGTTTAA

Predicted protein sequences of Glyma08g36840

Limit To All Plant Sequences

>Glyma08g36840.2   sequence type=predicted peptide   gene model=Glyma08g36840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEYRNKLVLAPMVRVGTLPFRLLAAQYGADITYCEEIIDHKMLKCERRINELIGSTDFVEKGTNNVVFRTCDEEKDRVVFQIGTSDAVRALTTAQLVCNDVAAVDINMGCPKSFSVSGGMGAALLSKPELIHDILTTLKRNLNTPVTCKIRLLKSPHDTVELARRIEKTGVSALAVHGRKVPDRPRDPAKWNEIADVVSALSIPVIENGDVFENDDVERIKSATGASSVMVARGALWNASMFSPEGKVSYEAVKREYIRKCILWDNDIKSTKHTLKEMIIHYSCLELPEGKAVIKSESMADLALVKAISIQLNLIFPPPSSRLKPKSLNSHSHVVHQTLNSIKV*

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